Hb_000808_030

Information

Type transcription factor
Description TF Family: PHD
Location Contig808: 30382-33904
Sequence    

Annotation

kegg
ID rcu:RCOM_1434330
description splicing factor, arginine/serine-rich 2,rnap interacting protein, putative
nr
ID XP_012088947.1
description PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
swissprot
ID Q9P1Y6
description PHD and RING finger domain-containing protein 1 OS=Homo sapiens GN=PHRF1 PE=1 SV=3
trembl
ID B9RFG0
description Splicing factor, arginine/serine-rich 2,rnap interacting protein, putative OS=Ricinus communis GN=RCOM_1434330 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59072: 30272-33923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000808_030 0.0 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
2 Hb_003747_100 0.0651630503 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
3 Hb_000120_130 0.0740603613 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
4 Hb_001004_060 0.0803908291 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
5 Hb_000964_130 0.080594048 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]
6 Hb_011671_410 0.0824867767 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
7 Hb_001999_290 0.0844423692 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
8 Hb_002783_040 0.0866144397 transcription factor TF Family: IWS1 -
9 Hb_001488_180 0.0873126746 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
10 Hb_010712_050 0.0873429261 - - PREDICTED: protein ELC-like [Jatropha curcas]
11 Hb_005736_020 0.0888098224 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
12 Hb_005489_020 0.0892025657 - - conserved hypothetical protein [Ricinus communis]
13 Hb_027346_010 0.0900977103 - - -
14 Hb_002798_070 0.0903272899 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
15 Hb_005725_210 0.0905985327 - - PREDICTED: RNA-binding protein 1 [Jatropha curcas]
16 Hb_000574_400 0.0908268245 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Jatropha curcas]
17 Hb_001104_190 0.0919032332 - - PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
18 Hb_009150_020 0.0919535583 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
19 Hb_001635_120 0.0920612498 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
20 Hb_002818_030 0.0923577594 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]

Gene co-expression network

sample Hb_000808_030 Hb_000808_030 Hb_003747_100 Hb_003747_100 Hb_000808_030--Hb_003747_100 Hb_000120_130 Hb_000120_130 Hb_000808_030--Hb_000120_130 Hb_001004_060 Hb_001004_060 Hb_000808_030--Hb_001004_060 Hb_000964_130 Hb_000964_130 Hb_000808_030--Hb_000964_130 Hb_011671_410 Hb_011671_410 Hb_000808_030--Hb_011671_410 Hb_001999_290 Hb_001999_290 Hb_000808_030--Hb_001999_290 Hb_000331_680 Hb_000331_680 Hb_003747_100--Hb_000331_680 Hb_003747_100--Hb_000120_130 Hb_000077_140 Hb_000077_140 Hb_003747_100--Hb_000077_140 Hb_003504_030 Hb_003504_030 Hb_003747_100--Hb_003504_030 Hb_003747_100--Hb_000964_130 Hb_006275_020 Hb_006275_020 Hb_000120_130--Hb_006275_020 Hb_000015_170 Hb_000015_170 Hb_000120_130--Hb_000015_170 Hb_000861_080 Hb_000861_080 Hb_000120_130--Hb_000861_080 Hb_002783_040 Hb_002783_040 Hb_000120_130--Hb_002783_040 Hb_000329_710 Hb_000329_710 Hb_001004_060--Hb_000329_710 Hb_000792_010 Hb_000792_010 Hb_001004_060--Hb_000792_010 Hb_000327_270 Hb_000327_270 Hb_001004_060--Hb_000327_270 Hb_001004_060--Hb_001999_290 Hb_001205_230 Hb_001205_230 Hb_001004_060--Hb_001205_230 Hb_005736_020 Hb_005736_020 Hb_001004_060--Hb_005736_020 Hb_001999_090 Hb_001999_090 Hb_000964_130--Hb_001999_090 Hb_000866_120 Hb_000866_120 Hb_000964_130--Hb_000866_120 Hb_000017_220 Hb_000017_220 Hb_000964_130--Hb_000017_220 Hb_002007_160 Hb_002007_160 Hb_000964_130--Hb_002007_160 Hb_000170_130 Hb_000170_130 Hb_011671_410--Hb_000170_130 Hb_011671_410--Hb_005736_020 Hb_000204_120 Hb_000204_120 Hb_011671_410--Hb_000204_120 Hb_000672_040 Hb_000672_040 Hb_011671_410--Hb_000672_040 Hb_062226_070 Hb_062226_070 Hb_011671_410--Hb_062226_070 Hb_011671_410--Hb_001999_290 Hb_001157_240 Hb_001157_240 Hb_001999_290--Hb_001157_240 Hb_000174_270 Hb_000174_270 Hb_001999_290--Hb_000174_270 Hb_004079_060 Hb_004079_060 Hb_001999_290--Hb_004079_060 Hb_001999_290--Hb_005736_020 Hb_001999_290--Hb_062226_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.40019 17.5297 6.1746 8.16897 7.50015 8.82442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4677 8.61765 10.8613 6.99646 14.8005

CAGE analysis