Hb_000866_120

Information

Type -
Description -
Location Contig866: 113650-126662
Sequence    

Annotation

kegg
ID rcu:RCOM_1615280
description CRP, putative
nr
ID XP_012083389.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
swissprot
ID H3K2Y6
description Mediator of RNA polymerase II transcription subunit 12 OS=Arabidopsis thaliana GN=MED12 PE=1 SV=1
trembl
ID B9RDS4
description CRP, putative OS=Ricinus communis GN=RCOM_1615280 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60939: 111515-124687 , PASA_asmbl_60940: 111833-124687 , PASA_asmbl_60941: 111554-124687 , PASA_asmbl_60944: 124688-126555
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_120 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
2 Hb_002007_160 0.0561875748 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
3 Hb_000172_110 0.0613056678 - - -
4 Hb_000270_670 0.0670471855 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
5 Hb_002316_150 0.0673539583 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
6 Hb_002798_070 0.0744354319 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
7 Hb_000890_050 0.0791510047 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
8 Hb_000392_150 0.0796271111 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g74580 [Jatropha curcas]
9 Hb_000964_130 0.0820819449 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]
10 Hb_009767_080 0.0846576051 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
11 Hb_010222_070 0.0857251982 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
12 Hb_002780_010 0.0868034214 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
13 Hb_048219_010 0.0884134926 - - coronatine-insensitive 1 [Hevea brasiliensis]
14 Hb_000130_490 0.0893904798 - - PREDICTED: uncharacterized protein LOC105637408 isoform X2 [Jatropha curcas]
15 Hb_001268_380 0.0895453126 - - PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Jatropha curcas]
16 Hb_012564_030 0.0901837326 - - coronatine-insensitive 1 [Hevea brasiliensis]
17 Hb_006718_020 0.0902147262 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
18 Hb_007441_220 0.0908864588 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
19 Hb_000599_190 0.092912433 transcription factor TF Family: SNF2 DNA repair and recombination protein RAD26, putative [Ricinus communis]
20 Hb_002234_170 0.0930566919 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000866_120 Hb_000866_120 Hb_002007_160 Hb_002007_160 Hb_000866_120--Hb_002007_160 Hb_000172_110 Hb_000172_110 Hb_000866_120--Hb_000172_110 Hb_000270_670 Hb_000270_670 Hb_000866_120--Hb_000270_670 Hb_002316_150 Hb_002316_150 Hb_000866_120--Hb_002316_150 Hb_002798_070 Hb_002798_070 Hb_000866_120--Hb_002798_070 Hb_000890_050 Hb_000890_050 Hb_000866_120--Hb_000890_050 Hb_000599_190 Hb_000599_190 Hb_002007_160--Hb_000599_190 Hb_029142_050 Hb_029142_050 Hb_002007_160--Hb_029142_050 Hb_002780_010 Hb_002780_010 Hb_002007_160--Hb_002780_010 Hb_010222_070 Hb_010222_070 Hb_002007_160--Hb_010222_070 Hb_002007_160--Hb_002798_070 Hb_000172_110--Hb_000270_670 Hb_000172_110--Hb_002316_150 Hb_000130_490 Hb_000130_490 Hb_000172_110--Hb_000130_490 Hb_000230_500 Hb_000230_500 Hb_000172_110--Hb_000230_500 Hb_001999_090 Hb_001999_090 Hb_000172_110--Hb_001999_090 Hb_000270_670--Hb_002316_150 Hb_007441_220 Hb_007441_220 Hb_000270_670--Hb_007441_220 Hb_000270_670--Hb_000890_050 Hb_004143_130 Hb_004143_130 Hb_000270_670--Hb_004143_130 Hb_006718_020 Hb_006718_020 Hb_002316_150--Hb_006718_020 Hb_002316_150--Hb_007441_220 Hb_000140_230 Hb_000140_230 Hb_002316_150--Hb_000140_230 Hb_012779_090 Hb_012779_090 Hb_002798_070--Hb_012779_090 Hb_000243_250 Hb_000243_250 Hb_002798_070--Hb_000243_250 Hb_002818_030 Hb_002818_030 Hb_002798_070--Hb_002818_030 Hb_002783_040 Hb_002783_040 Hb_002798_070--Hb_002783_040 Hb_162275_050 Hb_162275_050 Hb_002798_070--Hb_162275_050 Hb_000442_010 Hb_000442_010 Hb_002798_070--Hb_000442_010 Hb_009767_080 Hb_009767_080 Hb_000890_050--Hb_009767_080 Hb_000890_050--Hb_004143_130 Hb_015807_070 Hb_015807_070 Hb_000890_050--Hb_015807_070 Hb_000318_390 Hb_000318_390 Hb_000890_050--Hb_000318_390 Hb_001967_030 Hb_001967_030 Hb_000890_050--Hb_001967_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.6138 28.6353 7.23022 9.80921 12.1774 12.4586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3524 11.5446 23.6879 12.9231 15.3566

CAGE analysis