Hb_010222_070

Information

Type desease resistance
Description Gene Name: TIR
Location Contig10222: 66455-71378
Sequence    

Annotation

kegg
ID rcu:RCOM_1429080
description leucine-rich repeat-containing protein, putative
nr
ID XP_012089185.1
description PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID B9REV4
description Leucine-rich repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1429080 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01050: 66825-68100 , PASA_asmbl_01051: 68204-68472 , PASA_asmbl_01052: 68576-69981 , PASA_asmbl_01053: 70458-70947
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010222_070 0.0 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
2 Hb_003768_050 0.0724028493 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
3 Hb_000024_040 0.0725390027 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
4 Hb_001217_050 0.0743532833 - - actin binding protein, putative [Ricinus communis]
5 Hb_002007_160 0.0747371056 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
6 Hb_000347_390 0.0816838917 - - PREDICTED: exportin-T [Jatropha curcas]
7 Hb_002234_090 0.0832817363 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
8 Hb_033772_030 0.0835816268 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
9 Hb_000107_490 0.0842110179 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
10 Hb_000866_120 0.0857251982 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
11 Hb_000599_190 0.0867946226 transcription factor TF Family: SNF2 DNA repair and recombination protein RAD26, putative [Ricinus communis]
12 Hb_004586_290 0.0873855918 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
13 Hb_000317_370 0.089138475 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
14 Hb_004705_020 0.0903013463 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
15 Hb_000976_210 0.0903410052 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
16 Hb_000347_400 0.0919524296 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
17 Hb_001628_070 0.0926765902 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_000025_280 0.0931433912 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]
19 Hb_000017_220 0.0950886936 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
20 Hb_002217_170 0.0953450469 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]

Gene co-expression network

sample Hb_010222_070 Hb_010222_070 Hb_003768_050 Hb_003768_050 Hb_010222_070--Hb_003768_050 Hb_000024_040 Hb_000024_040 Hb_010222_070--Hb_000024_040 Hb_001217_050 Hb_001217_050 Hb_010222_070--Hb_001217_050 Hb_002007_160 Hb_002007_160 Hb_010222_070--Hb_002007_160 Hb_000347_390 Hb_000347_390 Hb_010222_070--Hb_000347_390 Hb_002234_090 Hb_002234_090 Hb_010222_070--Hb_002234_090 Hb_003768_050--Hb_002234_090 Hb_003768_050--Hb_000347_390 Hb_000025_280 Hb_000025_280 Hb_003768_050--Hb_000025_280 Hb_005551_020 Hb_005551_020 Hb_003768_050--Hb_005551_020 Hb_001614_060 Hb_001614_060 Hb_003768_050--Hb_001614_060 Hb_000017_220 Hb_000017_220 Hb_003768_050--Hb_000017_220 Hb_000024_040--Hb_000347_390 Hb_001628_070 Hb_001628_070 Hb_000024_040--Hb_001628_070 Hb_000703_200 Hb_000703_200 Hb_000024_040--Hb_000703_200 Hb_004586_290 Hb_004586_290 Hb_000024_040--Hb_004586_290 Hb_004705_020 Hb_004705_020 Hb_000024_040--Hb_004705_020 Hb_000479_070 Hb_000479_070 Hb_000024_040--Hb_000479_070 Hb_000107_490 Hb_000107_490 Hb_001217_050--Hb_000107_490 Hb_000313_120 Hb_000313_120 Hb_001217_050--Hb_000313_120 Hb_000245_040 Hb_000245_040 Hb_001217_050--Hb_000245_040 Hb_004030_080 Hb_004030_080 Hb_001217_050--Hb_004030_080 Hb_000599_190 Hb_000599_190 Hb_001217_050--Hb_000599_190 Hb_000866_120 Hb_000866_120 Hb_002007_160--Hb_000866_120 Hb_002007_160--Hb_000599_190 Hb_029142_050 Hb_029142_050 Hb_002007_160--Hb_029142_050 Hb_002780_010 Hb_002780_010 Hb_002007_160--Hb_002780_010 Hb_002798_070 Hb_002798_070 Hb_002007_160--Hb_002798_070 Hb_001473_110 Hb_001473_110 Hb_000347_390--Hb_001473_110 Hb_000347_400 Hb_000347_400 Hb_000347_390--Hb_000347_400 Hb_000347_390--Hb_005551_020 Hb_000347_390--Hb_000017_220 Hb_010712_050 Hb_010712_050 Hb_002234_090--Hb_010712_050 Hb_002675_130 Hb_002675_130 Hb_002234_090--Hb_002675_130 Hb_004916_010 Hb_004916_010 Hb_002234_090--Hb_004916_010 Hb_003835_070 Hb_003835_070 Hb_002234_090--Hb_003835_070 Hb_003544_060 Hb_003544_060 Hb_002234_090--Hb_003544_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.17584 9.18724 2.49254 4.25461 3.20914 3.82252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.92017 2.89933 5.77365 5.42709 3.86203

CAGE analysis