Hb_029142_050

Information

Type desease resistance
Description Gene Name: PPR
Location Contig29142: 36878-47707
Sequence    

Annotation

kegg
ID rcu:RCOM_1298340
description Disease resistance protein RPS2, putative (EC:3.1.3.16)
nr
ID XP_012078838.1
description PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
swissprot
ID Q9M9R6
description Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana GN=PCMP-A4 PE=2 SV=2
trembl
ID A0A067KJJ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13365 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at1g14470

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30554: 35652-36022 , PASA_asmbl_30556: 39083-39430 , PASA_asmbl_30559: 44755-45197 , PASA_asmbl_30560: 46419-46827
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029142_050 0.0 desease resistance Gene Name: PPR PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
2 Hb_002007_160 0.0735276353 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
3 Hb_001268_380 0.0906764604 - - PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Jatropha curcas]
4 Hb_000392_150 0.0919172695 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g74580 [Jatropha curcas]
5 Hb_000866_120 0.0966803153 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
6 Hb_000046_580 0.0986365792 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
7 Hb_000003_550 0.1007853283 - - -
8 Hb_001629_060 0.101290882 transcription factor TF Family: SWI/SNF-SWI3 Flavin-containing amine oxidase domain-containing protein, putative [Ricinus communis]
9 Hb_000599_190 0.1054895408 transcription factor TF Family: SNF2 DNA repair and recombination protein RAD26, putative [Ricinus communis]
10 Hb_009150_020 0.1067086381 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
11 Hb_002780_010 0.1070794686 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
12 Hb_000175_220 0.1073540072 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
13 Hb_002316_150 0.108407254 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
14 Hb_009767_080 0.1085061747 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
15 Hb_002235_040 0.1085315251 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
16 Hb_002798_070 0.1117803515 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
17 Hb_000264_320 0.1122511032 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760 [Jatropha curcas]
18 Hb_000471_140 0.1129273107 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g28640 [Prunus mume]
19 Hb_002636_100 0.114516499 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
20 Hb_143766_060 0.1160634382 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]

Gene co-expression network

sample Hb_029142_050 Hb_029142_050 Hb_002007_160 Hb_002007_160 Hb_029142_050--Hb_002007_160 Hb_001268_380 Hb_001268_380 Hb_029142_050--Hb_001268_380 Hb_000392_150 Hb_000392_150 Hb_029142_050--Hb_000392_150 Hb_000866_120 Hb_000866_120 Hb_029142_050--Hb_000866_120 Hb_000046_580 Hb_000046_580 Hb_029142_050--Hb_000046_580 Hb_000003_550 Hb_000003_550 Hb_029142_050--Hb_000003_550 Hb_002007_160--Hb_000866_120 Hb_000599_190 Hb_000599_190 Hb_002007_160--Hb_000599_190 Hb_002780_010 Hb_002780_010 Hb_002007_160--Hb_002780_010 Hb_010222_070 Hb_010222_070 Hb_002007_160--Hb_010222_070 Hb_002798_070 Hb_002798_070 Hb_002007_160--Hb_002798_070 Hb_004228_020 Hb_004228_020 Hb_001268_380--Hb_004228_020 Hb_009767_080 Hb_009767_080 Hb_001268_380--Hb_009767_080 Hb_000890_050 Hb_000890_050 Hb_001268_380--Hb_000890_050 Hb_001268_380--Hb_002780_010 Hb_005486_030 Hb_005486_030 Hb_001268_380--Hb_005486_030 Hb_001268_380--Hb_002007_160 Hb_000392_150--Hb_000866_120 Hb_000976_210 Hb_000976_210 Hb_000392_150--Hb_000976_210 Hb_000392_150--Hb_002798_070 Hb_000392_150--Hb_002007_160 Hb_000330_040 Hb_000330_040 Hb_000392_150--Hb_000330_040 Hb_000172_110 Hb_000172_110 Hb_000866_120--Hb_000172_110 Hb_000270_670 Hb_000270_670 Hb_000866_120--Hb_000270_670 Hb_002316_150 Hb_002316_150 Hb_000866_120--Hb_002316_150 Hb_000866_120--Hb_002798_070 Hb_000866_120--Hb_000890_050 Hb_000046_580--Hb_005486_030 Hb_000130_490 Hb_000130_490 Hb_000046_580--Hb_000130_490 Hb_000005_070 Hb_000005_070 Hb_000046_580--Hb_000005_070 Hb_000015_050 Hb_000015_050 Hb_000046_580--Hb_000015_050 Hb_000046_580--Hb_002780_010 Hb_001104_190 Hb_001104_190 Hb_000003_550--Hb_001104_190 Hb_006117_080 Hb_006117_080 Hb_000003_550--Hb_006117_080 Hb_000321_150 Hb_000321_150 Hb_000003_550--Hb_000321_150 Hb_000003_550--Hb_002007_160 Hb_000003_550--Hb_000866_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.847132 1.75074 0.405595 0.477286 0.812144 0.52537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.287333 0.709803 1.16176 0.879771 1.02651

CAGE analysis