Hb_000046_580

Information

Type -
Description -
Location Contig46: 434230-444294
Sequence    

Annotation

kegg
ID tcc:TCM_021180
description CW-type Zinc Finger-like protein
nr
ID XP_012069368.1
description PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
swissprot
ID Q8TE76
description MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2
trembl
ID A0A067L7B9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01997 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43670: 437781-439527 , PASA_asmbl_43672: 440056-444099 , PASA_asmbl_43673: 444256-444539
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_580 0.0 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
2 Hb_029142_050 0.0986365792 desease resistance Gene Name: PPR PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
3 Hb_005486_030 0.1011552791 transcription factor TF Family: PHD hypothetical protein POPTR_0017s10890g [Populus trichocarpa]
4 Hb_000130_490 0.1074860924 - - PREDICTED: uncharacterized protein LOC105637408 isoform X2 [Jatropha curcas]
5 Hb_000005_070 0.1147440901 transcription factor TF Family: PHD protein binding protein, putative [Ricinus communis]
6 Hb_000015_050 0.1163522878 - - hypothetical protein JCGZ_01495 [Jatropha curcas]
7 Hb_002780_010 0.1189755719 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
8 Hb_002316_150 0.1209773856 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
9 Hb_002316_160 0.1211157508 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
10 Hb_012490_090 0.1211387403 - - PREDICTED: myosin-17 [Jatropha curcas]
11 Hb_001268_380 0.1212148117 - - PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Jatropha curcas]
12 Hb_001969_110 0.1213083476 - - PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic [Jatropha curcas]
13 Hb_000172_110 0.1224924266 - - -
14 Hb_005273_030 0.1225097281 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
15 Hb_007575_080 0.1231058511 - - PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
16 Hb_000003_550 0.1231370046 - - -
17 Hb_024185_010 0.1245718219 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
18 Hb_009767_080 0.1253762463 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
19 Hb_000866_120 0.1269040319 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
20 Hb_008053_040 0.1272083518 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_000046_580 Hb_000046_580 Hb_029142_050 Hb_029142_050 Hb_000046_580--Hb_029142_050 Hb_005486_030 Hb_005486_030 Hb_000046_580--Hb_005486_030 Hb_000130_490 Hb_000130_490 Hb_000046_580--Hb_000130_490 Hb_000005_070 Hb_000005_070 Hb_000046_580--Hb_000005_070 Hb_000015_050 Hb_000015_050 Hb_000046_580--Hb_000015_050 Hb_002780_010 Hb_002780_010 Hb_000046_580--Hb_002780_010 Hb_002007_160 Hb_002007_160 Hb_029142_050--Hb_002007_160 Hb_001268_380 Hb_001268_380 Hb_029142_050--Hb_001268_380 Hb_000392_150 Hb_000392_150 Hb_029142_050--Hb_000392_150 Hb_000866_120 Hb_000866_120 Hb_029142_050--Hb_000866_120 Hb_000003_550 Hb_000003_550 Hb_029142_050--Hb_000003_550 Hb_005486_030--Hb_000130_490 Hb_000672_040 Hb_000672_040 Hb_005486_030--Hb_000672_040 Hb_002316_160 Hb_002316_160 Hb_005486_030--Hb_002316_160 Hb_009767_080 Hb_009767_080 Hb_005486_030--Hb_009767_080 Hb_009898_010 Hb_009898_010 Hb_005486_030--Hb_009898_010 Hb_008053_040 Hb_008053_040 Hb_005486_030--Hb_008053_040 Hb_000130_490--Hb_002316_160 Hb_000130_490--Hb_009767_080 Hb_006718_020 Hb_006718_020 Hb_000130_490--Hb_006718_020 Hb_011671_410 Hb_011671_410 Hb_000130_490--Hb_011671_410 Hb_001999_290 Hb_001999_290 Hb_000130_490--Hb_001999_290 Hb_128743_010 Hb_128743_010 Hb_000005_070--Hb_128743_010 Hb_000174_290 Hb_000174_290 Hb_000005_070--Hb_000174_290 Hb_004079_060 Hb_004079_060 Hb_000005_070--Hb_004079_060 Hb_004108_100 Hb_004108_100 Hb_000005_070--Hb_004108_100 Hb_006117_080 Hb_006117_080 Hb_000005_070--Hb_006117_080 Hb_002233_100 Hb_002233_100 Hb_000005_070--Hb_002233_100 Hb_005348_010 Hb_005348_010 Hb_000015_050--Hb_005348_010 Hb_002174_030 Hb_002174_030 Hb_000015_050--Hb_002174_030 Hb_002909_120 Hb_002909_120 Hb_000015_050--Hb_002909_120 Hb_002095_070 Hb_002095_070 Hb_000015_050--Hb_002095_070 Hb_000046_190 Hb_000046_190 Hb_000015_050--Hb_000046_190 Hb_000015_050--Hb_009767_080 Hb_002780_010--Hb_002007_160 Hb_002780_010--Hb_009898_010 Hb_002780_010--Hb_009767_080 Hb_000321_150 Hb_000321_150 Hb_002780_010--Hb_000321_150 Hb_000260_070 Hb_000260_070 Hb_002780_010--Hb_000260_070 Hb_002780_010--Hb_001268_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.60788 11.2753 2.49253 2.94663 7.45218 3.44527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.52477 3.59127 8.93324 4.97595 9.51089

CAGE analysis