Hb_000015_050

Information

Type -
Description -
Location Contig15: 43969-47047
Sequence    

Annotation

kegg
ID rcu:RCOM_0465040
description hypothetical protein
nr
ID KDP44995.1
description hypothetical protein JCGZ_01495 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LJY5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01495 PE=4 SV=1
Gene Ontology
ID GO:0007229
description integrin alpha-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12495: 44190-44584 , PASA_asmbl_12496: 44593-45511
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000015_050 0.0 - - hypothetical protein JCGZ_01495 [Jatropha curcas]
2 Hb_005348_010 0.0835949387 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002174_030 0.0840156555 - - transcription elongation factor s-II, putative [Ricinus communis]
4 Hb_002909_120 0.0854404448 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
5 Hb_002095_070 0.0862037078 - - PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Jatropha curcas]
6 Hb_000046_190 0.0886310175 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
7 Hb_009767_080 0.0918118474 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
8 Hb_001628_070 0.0919649969 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_000412_010 0.0928654323 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_005656_040 0.094500034 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
11 Hb_007441_160 0.0948335136 - - RNA binding protein, putative [Ricinus communis]
12 Hb_003119_080 0.09552635 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
13 Hb_003211_040 0.096403676 - - PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
14 Hb_019430_020 0.1000246142 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
15 Hb_000665_230 0.1000448825 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
16 Hb_000656_060 0.1003547516 - - DNA binding protein, putative [Ricinus communis]
17 Hb_003805_050 0.1018064195 - - -
18 Hb_097185_010 0.1026694834 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
19 Hb_005186_040 0.1044962172 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
20 Hb_011689_030 0.104556989 - - 80 kD MCM3-associated protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000015_050 Hb_000015_050 Hb_005348_010 Hb_005348_010 Hb_000015_050--Hb_005348_010 Hb_002174_030 Hb_002174_030 Hb_000015_050--Hb_002174_030 Hb_002909_120 Hb_002909_120 Hb_000015_050--Hb_002909_120 Hb_002095_070 Hb_002095_070 Hb_000015_050--Hb_002095_070 Hb_000046_190 Hb_000046_190 Hb_000015_050--Hb_000046_190 Hb_009767_080 Hb_009767_080 Hb_000015_050--Hb_009767_080 Hb_000329_750 Hb_000329_750 Hb_005348_010--Hb_000329_750 Hb_003805_050 Hb_003805_050 Hb_005348_010--Hb_003805_050 Hb_006295_020 Hb_006295_020 Hb_005348_010--Hb_006295_020 Hb_003203_030 Hb_003203_030 Hb_005348_010--Hb_003203_030 Hb_005488_170 Hb_005488_170 Hb_005348_010--Hb_005488_170 Hb_005348_010--Hb_002909_120 Hb_011689_030 Hb_011689_030 Hb_002174_030--Hb_011689_030 Hb_000025_320 Hb_000025_320 Hb_002174_030--Hb_000025_320 Hb_005357_260 Hb_005357_260 Hb_002174_030--Hb_005357_260 Hb_001191_120 Hb_001191_120 Hb_002174_030--Hb_001191_120 Hb_000099_040 Hb_000099_040 Hb_002174_030--Hb_000099_040 Hb_000176_100 Hb_000176_100 Hb_002174_030--Hb_000176_100 Hb_002333_050 Hb_002333_050 Hb_002909_120--Hb_002333_050 Hb_002909_120--Hb_000046_190 Hb_003119_080 Hb_003119_080 Hb_002909_120--Hb_003119_080 Hb_009486_170 Hb_009486_170 Hb_002909_120--Hb_009486_170 Hb_188063_010 Hb_188063_010 Hb_002909_120--Hb_188063_010 Hb_001133_030 Hb_001133_030 Hb_002909_120--Hb_001133_030 Hb_000261_150 Hb_000261_150 Hb_002095_070--Hb_000261_150 Hb_003211_040 Hb_003211_040 Hb_002095_070--Hb_003211_040 Hb_000083_070 Hb_000083_070 Hb_002095_070--Hb_000083_070 Hb_000836_020 Hb_000836_020 Hb_002095_070--Hb_000836_020 Hb_002095_070--Hb_003805_050 Hb_001085_030 Hb_001085_030 Hb_002095_070--Hb_001085_030 Hb_000046_190--Hb_009767_080 Hb_000046_190--Hb_003119_080 Hb_019430_020 Hb_019430_020 Hb_000046_190--Hb_019430_020 Hb_000046_190--Hb_005488_170 Hb_000046_190--Hb_005348_010 Hb_009767_080--Hb_019430_020 Hb_000890_050 Hb_000890_050 Hb_009767_080--Hb_000890_050 Hb_000684_250 Hb_000684_250 Hb_009767_080--Hb_000684_250 Hb_009898_010 Hb_009898_010 Hb_009767_080--Hb_009898_010 Hb_000321_150 Hb_000321_150 Hb_009767_080--Hb_000321_150 Hb_000069_470 Hb_000069_470 Hb_009767_080--Hb_000069_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.27437 5.34923 1.93826 1.49618 3.60304 2.84529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.94998 1.21077 3.71183 4.31828 4.62025

CAGE analysis