Hb_000046_190

Information

Type -
Description -
Location Contig46: 140972-143950
Sequence    

Annotation

kegg
ID cic:CICLE_v10004243mg
description hypothetical protein
nr
ID XP_012088500.1
description PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
swissprot
ID O89114
description DnaJ homolog subfamily B member 5 OS=Mus musculus GN=Dnajb5 PE=2 SV=1
trembl
ID A0A067JWR5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25382 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43623: 140633-146121
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_190 0.0 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
2 Hb_002909_120 0.0558659776 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
3 Hb_009767_080 0.0757803299 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
4 Hb_003119_080 0.0760337988 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
5 Hb_019430_020 0.0761223071 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
6 Hb_005488_170 0.0766388119 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
7 Hb_005348_010 0.0770439138 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004182_050 0.0793572878 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
9 Hb_002333_050 0.080783427 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
10 Hb_002784_110 0.0830074909 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
11 Hb_000906_100 0.08451006 - - PREDICTED: uncharacterized protein LOC105648070 [Jatropha curcas]
12 Hb_000412_010 0.0845454997 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000665_230 0.0863855381 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
14 Hb_000329_750 0.0866569992 - - PREDICTED: uncharacterized protein LOC105643205 [Jatropha curcas]
15 Hb_011689_030 0.0870446637 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
16 Hb_000672_040 0.0879173484 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
17 Hb_000174_290 0.0883575094 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
18 Hb_000015_050 0.0886310175 - - hypothetical protein JCGZ_01495 [Jatropha curcas]
19 Hb_009898_010 0.0886316128 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
20 Hb_002233_100 0.0891201236 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Malus domestica]

Gene co-expression network

sample Hb_000046_190 Hb_000046_190 Hb_002909_120 Hb_002909_120 Hb_000046_190--Hb_002909_120 Hb_009767_080 Hb_009767_080 Hb_000046_190--Hb_009767_080 Hb_003119_080 Hb_003119_080 Hb_000046_190--Hb_003119_080 Hb_019430_020 Hb_019430_020 Hb_000046_190--Hb_019430_020 Hb_005488_170 Hb_005488_170 Hb_000046_190--Hb_005488_170 Hb_005348_010 Hb_005348_010 Hb_000046_190--Hb_005348_010 Hb_002333_050 Hb_002333_050 Hb_002909_120--Hb_002333_050 Hb_002909_120--Hb_003119_080 Hb_009486_170 Hb_009486_170 Hb_002909_120--Hb_009486_170 Hb_188063_010 Hb_188063_010 Hb_002909_120--Hb_188063_010 Hb_001133_030 Hb_001133_030 Hb_002909_120--Hb_001133_030 Hb_009767_080--Hb_019430_020 Hb_000890_050 Hb_000890_050 Hb_009767_080--Hb_000890_050 Hb_000684_250 Hb_000684_250 Hb_009767_080--Hb_000684_250 Hb_009898_010 Hb_009898_010 Hb_009767_080--Hb_009898_010 Hb_000321_150 Hb_000321_150 Hb_009767_080--Hb_000321_150 Hb_000069_470 Hb_000069_470 Hb_009767_080--Hb_000069_470 Hb_011609_150 Hb_011609_150 Hb_003119_080--Hb_011609_150 Hb_000406_020 Hb_000406_020 Hb_003119_080--Hb_000406_020 Hb_000086_690 Hb_000086_690 Hb_003119_080--Hb_000086_690 Hb_003211_040 Hb_003211_040 Hb_003119_080--Hb_003211_040 Hb_000661_130 Hb_000661_130 Hb_019430_020--Hb_000661_130 Hb_001322_130 Hb_001322_130 Hb_019430_020--Hb_001322_130 Hb_000665_230 Hb_000665_230 Hb_019430_020--Hb_000665_230 Hb_019430_020--Hb_000321_150 Hb_002253_080 Hb_002253_080 Hb_019430_020--Hb_002253_080 Hb_002600_060 Hb_002600_060 Hb_005488_170--Hb_002600_060 Hb_005701_130 Hb_005701_130 Hb_005488_170--Hb_005701_130 Hb_005488_170--Hb_002909_120 Hb_010998_020 Hb_010998_020 Hb_005488_170--Hb_010998_020 Hb_012053_090 Hb_012053_090 Hb_005488_170--Hb_012053_090 Hb_005488_170--Hb_005348_010 Hb_000329_750 Hb_000329_750 Hb_005348_010--Hb_000329_750 Hb_003805_050 Hb_003805_050 Hb_005348_010--Hb_003805_050 Hb_006295_020 Hb_006295_020 Hb_005348_010--Hb_006295_020 Hb_003203_030 Hb_003203_030 Hb_005348_010--Hb_003203_030 Hb_005348_010--Hb_002909_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.155 16.5746 5.41319 8.93778 15.0844 11.0276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.21072 5.01823 11.1833 11.7647 19.2009

CAGE analysis