Hb_010998_020

Information

Type -
Description -
Location Contig10998: 20515-61085
Sequence    

Annotation

kegg
ID rcu:RCOM_0915870
description ubiquitin ligase E3 alpha, putative
nr
ID XP_002532325.1
description ubiquitin ligase E3 alpha, putative [Ricinus communis]
swissprot
ID F4KCC2
description E3 ubiquitin-protein ligase PRT6 OS=Arabidopsis thaliana GN=PRT6 PE=2 SV=1
trembl
ID B9T256
description Ubiquitin ligase E3 alpha, putative OS=Ricinus communis GN=RCOM_0915870 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ubr1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02938: 21505-30663 , PASA_asmbl_02940: 31630-61013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010998_020 0.0 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]
2 Hb_005488_170 0.0705312042 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
3 Hb_012053_090 0.0977005129 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
4 Hb_001726_050 0.0991971391 transcription factor TF Family: C3H Nucleic acid binding,zinc ion binding,DNA binding, putative isoform 1 [Theobroma cacao]
5 Hb_005701_130 0.1035624306 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
6 Hb_000714_040 0.1043505148 - - PREDICTED: uncharacterized protein LOC105634664 isoform X2 [Jatropha curcas]
7 Hb_002631_250 0.106689454 - - PREDICTED: pentatricopeptide repeat-containing protein At3g20730 [Jatropha curcas]
8 Hb_012098_070 0.106955512 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
9 Hb_000110_270 0.1139284955 - - prp4, putative [Ricinus communis]
10 Hb_010180_060 0.1166112568 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
11 Hb_000811_060 0.1174417283 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
12 Hb_013459_010 0.1174555412 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
13 Hb_012506_040 0.1197523926 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
14 Hb_099270_030 0.120103236 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
15 Hb_000815_170 0.1222897161 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
16 Hb_000445_090 0.1236335189 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
17 Hb_002521_020 0.1237963491 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
18 Hb_005486_030 0.1254205129 transcription factor TF Family: PHD hypothetical protein POPTR_0017s10890g [Populus trichocarpa]
19 Hb_005186_040 0.1257486935 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
20 Hb_135572_010 0.1258203614 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]

Gene co-expression network

sample Hb_010998_020 Hb_010998_020 Hb_005488_170 Hb_005488_170 Hb_010998_020--Hb_005488_170 Hb_012053_090 Hb_012053_090 Hb_010998_020--Hb_012053_090 Hb_001726_050 Hb_001726_050 Hb_010998_020--Hb_001726_050 Hb_005701_130 Hb_005701_130 Hb_010998_020--Hb_005701_130 Hb_000714_040 Hb_000714_040 Hb_010998_020--Hb_000714_040 Hb_002631_250 Hb_002631_250 Hb_010998_020--Hb_002631_250 Hb_002600_060 Hb_002600_060 Hb_005488_170--Hb_002600_060 Hb_005488_170--Hb_005701_130 Hb_002909_120 Hb_002909_120 Hb_005488_170--Hb_002909_120 Hb_005488_170--Hb_012053_090 Hb_005348_010 Hb_005348_010 Hb_005488_170--Hb_005348_010 Hb_012053_090--Hb_005701_130 Hb_002328_040 Hb_002328_040 Hb_012053_090--Hb_002328_040 Hb_012053_090--Hb_002600_060 Hb_003607_070 Hb_003607_070 Hb_012053_090--Hb_003607_070 Hb_000059_230 Hb_000059_230 Hb_012053_090--Hb_000059_230 Hb_001726_100 Hb_001726_100 Hb_001726_050--Hb_001726_100 Hb_000656_060 Hb_000656_060 Hb_001726_050--Hb_000656_060 Hb_001726_050--Hb_005488_170 Hb_099270_030 Hb_099270_030 Hb_001726_050--Hb_099270_030 Hb_005186_040 Hb_005186_040 Hb_001726_050--Hb_005186_040 Hb_001726_050--Hb_002909_120 Hb_000538_280 Hb_000538_280 Hb_005701_130--Hb_000538_280 Hb_001377_100 Hb_001377_100 Hb_005701_130--Hb_001377_100 Hb_001648_020 Hb_001648_020 Hb_005701_130--Hb_001648_020 Hb_005701_130--Hb_002600_060 Hb_000714_040--Hb_005488_170 Hb_000815_170 Hb_000815_170 Hb_000714_040--Hb_000815_170 Hb_013459_010 Hb_013459_010 Hb_000714_040--Hb_013459_010 Hb_003119_080 Hb_003119_080 Hb_000714_040--Hb_003119_080 Hb_000714_040--Hb_099270_030 Hb_000714_040--Hb_005348_010 Hb_030131_030 Hb_030131_030 Hb_002631_250--Hb_030131_030 Hb_000676_200 Hb_000676_200 Hb_002631_250--Hb_000676_200 Hb_001790_080 Hb_001790_080 Hb_002631_250--Hb_001790_080 Hb_003475_020 Hb_003475_020 Hb_002631_250--Hb_003475_020 Hb_029584_070 Hb_029584_070 Hb_002631_250--Hb_029584_070 Hb_001623_280 Hb_001623_280 Hb_002631_250--Hb_001623_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.4338 14.5504 6.58047 8.15283 13.6278 8.55668
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.78591 5.51662 13.2042 11.7068 29.4069

CAGE analysis