Hb_000077_140

Information

Type -
Description -
Location Contig77: 111899-121045
Sequence    

Annotation

kegg
ID rcu:RCOM_1174740
description structural constituent of cell wall, putative
nr
ID XP_002517918.1
description structural constituent of cell wall, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RVZ9
description Structural constituent of cell wall, putative OS=Ricinus communis GN=RCOM_1174740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57583: 111934-120970
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_140 0.0 - - structural constituent of cell wall, putative [Ricinus communis]
2 Hb_000331_680 0.0547019356 - - Protein bem46, putative [Ricinus communis]
3 Hb_000603_280 0.0567364005 - - PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]
4 Hb_002843_120 0.063217069 - - PREDICTED: uncharacterized protein LOC105645113 isoform X1 [Jatropha curcas]
5 Hb_003504_030 0.0660167796 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
6 Hb_000069_310 0.0679501629 - - ubiquitin ligase [Cucumis melo subsp. melo]
7 Hb_000915_180 0.0738334417 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
8 Hb_005653_090 0.0743372971 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
9 Hb_013399_100 0.0748499616 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000327_270 0.0753944179 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
11 Hb_007163_120 0.0805176208 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
12 Hb_000803_070 0.0808816621 - - PREDICTED: protein TRAUCO [Jatropha curcas]
13 Hb_005000_190 0.0811814515 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 64 [Jatropha curcas]
14 Hb_001195_530 0.0815915909 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000637_110 0.0816471561 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
16 Hb_003464_090 0.0818412005 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
17 Hb_065525_040 0.0824920801 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
18 Hb_002234_180 0.0828176809 - - conserved hypothetical protein [Ricinus communis]
19 Hb_030827_020 0.0830122452 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
20 Hb_020831_030 0.0833335895 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000077_140 Hb_000077_140 Hb_000331_680 Hb_000331_680 Hb_000077_140--Hb_000331_680 Hb_000603_280 Hb_000603_280 Hb_000077_140--Hb_000603_280 Hb_002843_120 Hb_002843_120 Hb_000077_140--Hb_002843_120 Hb_003504_030 Hb_003504_030 Hb_000077_140--Hb_003504_030 Hb_000069_310 Hb_000069_310 Hb_000077_140--Hb_000069_310 Hb_000915_180 Hb_000915_180 Hb_000077_140--Hb_000915_180 Hb_005653_090 Hb_005653_090 Hb_000331_680--Hb_005653_090 Hb_003464_090 Hb_003464_090 Hb_000331_680--Hb_003464_090 Hb_000331_680--Hb_000069_310 Hb_002890_290 Hb_002890_290 Hb_000331_680--Hb_002890_290 Hb_000327_270 Hb_000327_270 Hb_000331_680--Hb_000327_270 Hb_000603_280--Hb_002843_120 Hb_007163_120 Hb_007163_120 Hb_000603_280--Hb_007163_120 Hb_000603_280--Hb_005653_090 Hb_008406_200 Hb_008406_200 Hb_000603_280--Hb_008406_200 Hb_013399_100 Hb_013399_100 Hb_000603_280--Hb_013399_100 Hb_002267_140 Hb_002267_140 Hb_002843_120--Hb_002267_140 Hb_138596_010 Hb_138596_010 Hb_002843_120--Hb_138596_010 Hb_002843_120--Hb_003504_030 Hb_002843_120--Hb_013399_100 Hb_003504_030--Hb_000327_270 Hb_000037_190 Hb_000037_190 Hb_003504_030--Hb_000037_190 Hb_001799_180 Hb_001799_180 Hb_003504_030--Hb_001799_180 Hb_003504_030--Hb_013399_100 Hb_002732_040 Hb_002732_040 Hb_003504_030--Hb_002732_040 Hb_001409_020 Hb_001409_020 Hb_003504_030--Hb_001409_020 Hb_013358_040 Hb_013358_040 Hb_000069_310--Hb_013358_040 Hb_003849_110 Hb_003849_110 Hb_000069_310--Hb_003849_110 Hb_000069_310--Hb_000915_180 Hb_002818_030 Hb_002818_030 Hb_000069_310--Hb_002818_030 Hb_001473_160 Hb_001473_160 Hb_000069_310--Hb_001473_160 Hb_000915_180--Hb_013358_040 Hb_001195_530 Hb_001195_530 Hb_000915_180--Hb_001195_530 Hb_021419_030 Hb_021419_030 Hb_000915_180--Hb_021419_030 Hb_001408_140 Hb_001408_140 Hb_000915_180--Hb_001408_140 Hb_000915_180--Hb_000331_680
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.6605 55.747 39.9797 43.4835 30.4854 39.5401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.7001 29.0245 51.4523 31.514 31.2001

CAGE analysis