Hb_003747_100

Information

Type -
Description -
Location Contig3747: 99014-100531
Sequence    

Annotation

kegg
ID rcu:RCOM_1443770
description tyrosyl-tRNA synthetase, putative (EC:6.1.1.1)
nr
ID XP_012067411.1
description PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
swissprot
ID Q6MC06
description Tyrosine--tRNA ligase OS=Protochlamydia amoebophila (strain UWE25) GN=tyrS PE=3 SV=1
trembl
ID A0A067L0B5
description Tyrosine--tRNA ligase OS=Jatropha curcas GN=JCGZ_26914 PE=3 SV=1
Gene Ontology
ID GO:0005739
description probable tyrosine--trna mitochondrial isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 049_L21.ab1: 99004-99363

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003747_100 0.0 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
2 Hb_000808_030 0.0651630503 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
3 Hb_000331_680 0.0660622841 - - Protein bem46, putative [Ricinus communis]
4 Hb_000120_130 0.0755341692 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
5 Hb_000077_140 0.0839029485 - - structural constituent of cell wall, putative [Ricinus communis]
6 Hb_003504_030 0.0847529242 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
7 Hb_000964_130 0.0853887764 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]
8 Hb_000363_240 0.0856475967 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]
9 Hb_000318_250 0.086946391 - - PREDICTED: uncharacterized protein LOC105634251 [Jatropha curcas]
10 Hb_001799_180 0.0870549515 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
11 Hb_000327_270 0.0872580061 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
12 Hb_005489_020 0.087388575 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000732_010 0.0879976135 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
14 Hb_005653_090 0.0880297752 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
15 Hb_000868_090 0.0883211723 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
16 Hb_002234_180 0.0892914281 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000699_030 0.0898045461 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
18 Hb_001205_240 0.0909524833 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
19 Hb_001004_060 0.0914549701 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
20 Hb_003680_120 0.0919701209 - - PREDICTED: E3 ubiquitin-protein ligase UPL7 [Jatropha curcas]

Gene co-expression network

sample Hb_003747_100 Hb_003747_100 Hb_000808_030 Hb_000808_030 Hb_003747_100--Hb_000808_030 Hb_000331_680 Hb_000331_680 Hb_003747_100--Hb_000331_680 Hb_000120_130 Hb_000120_130 Hb_003747_100--Hb_000120_130 Hb_000077_140 Hb_000077_140 Hb_003747_100--Hb_000077_140 Hb_003504_030 Hb_003504_030 Hb_003747_100--Hb_003504_030 Hb_000964_130 Hb_000964_130 Hb_003747_100--Hb_000964_130 Hb_000808_030--Hb_000120_130 Hb_001004_060 Hb_001004_060 Hb_000808_030--Hb_001004_060 Hb_000808_030--Hb_000964_130 Hb_011671_410 Hb_011671_410 Hb_000808_030--Hb_011671_410 Hb_001999_290 Hb_001999_290 Hb_000808_030--Hb_001999_290 Hb_000331_680--Hb_000077_140 Hb_005653_090 Hb_005653_090 Hb_000331_680--Hb_005653_090 Hb_003464_090 Hb_003464_090 Hb_000331_680--Hb_003464_090 Hb_000069_310 Hb_000069_310 Hb_000331_680--Hb_000069_310 Hb_002890_290 Hb_002890_290 Hb_000331_680--Hb_002890_290 Hb_000327_270 Hb_000327_270 Hb_000331_680--Hb_000327_270 Hb_006275_020 Hb_006275_020 Hb_000120_130--Hb_006275_020 Hb_000015_170 Hb_000015_170 Hb_000120_130--Hb_000015_170 Hb_000861_080 Hb_000861_080 Hb_000120_130--Hb_000861_080 Hb_002783_040 Hb_002783_040 Hb_000120_130--Hb_002783_040 Hb_000603_280 Hb_000603_280 Hb_000077_140--Hb_000603_280 Hb_002843_120 Hb_002843_120 Hb_000077_140--Hb_002843_120 Hb_000077_140--Hb_003504_030 Hb_000077_140--Hb_000069_310 Hb_000915_180 Hb_000915_180 Hb_000077_140--Hb_000915_180 Hb_003504_030--Hb_000327_270 Hb_000037_190 Hb_000037_190 Hb_003504_030--Hb_000037_190 Hb_001799_180 Hb_001799_180 Hb_003504_030--Hb_001799_180 Hb_013399_100 Hb_013399_100 Hb_003504_030--Hb_013399_100 Hb_002732_040 Hb_002732_040 Hb_003504_030--Hb_002732_040 Hb_001409_020 Hb_001409_020 Hb_003504_030--Hb_001409_020 Hb_001999_090 Hb_001999_090 Hb_000964_130--Hb_001999_090 Hb_000866_120 Hb_000866_120 Hb_000964_130--Hb_000866_120 Hb_000017_220 Hb_000017_220 Hb_000964_130--Hb_000017_220 Hb_002007_160 Hb_002007_160 Hb_000964_130--Hb_002007_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.3553 28.4581 12.0333 16.3718 10.8379 16.8041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.9486 15.7279 19.2228 13.0665 19.4273

CAGE analysis