Hb_005725_210

Information

Type -
Description -
Location Contig5725: 126257-128202
Sequence    

Annotation

kegg
ID rcu:RCOM_1586330
description DAZ-associated protein, putative
nr
ID XP_012068168.1
description PREDICTED: RNA-binding protein 1 [Jatropha curcas]
swissprot
ID Q9C652
description RNA-binding protein 1 OS=Arabidopsis thaliana GN=RBP1 PE=2 SV=1
trembl
ID A0A067KZE7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15988 PE=4 SV=1
Gene Ontology
ID GO:0003676
description rna-binding protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49419: 126338-128188
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005725_210 0.0 - - PREDICTED: RNA-binding protein 1 [Jatropha curcas]
2 Hb_002798_070 0.065051727 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
3 Hb_000442_010 0.0660552649 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
4 Hb_003030_060 0.0689939466 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
5 Hb_004916_010 0.075237946 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
6 Hb_002818_030 0.0756713018 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
7 Hb_001828_130 0.0789891474 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
8 Hb_001104_190 0.0848215665 - - PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
9 Hb_010712_050 0.0874889618 - - PREDICTED: protein ELC-like [Jatropha curcas]
10 Hb_000015_170 0.0891789029 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009150_020 0.0892664455 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
12 Hb_004970_170 0.0892841847 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 [Jatropha curcas]
13 Hb_006478_040 0.0896976794 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
14 Hb_012779_090 0.0899299443 - - PREDICTED: lipase member N [Jatropha curcas]
15 Hb_008959_020 0.0904293824 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
16 Hb_000808_030 0.0905985327 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
17 Hb_000049_260 0.0916245075 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_000243_250 0.0918726658 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
19 Hb_003849_110 0.0925766282 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
20 Hb_001546_080 0.0928808809 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005725_210 Hb_005725_210 Hb_002798_070 Hb_002798_070 Hb_005725_210--Hb_002798_070 Hb_000442_010 Hb_000442_010 Hb_005725_210--Hb_000442_010 Hb_003030_060 Hb_003030_060 Hb_005725_210--Hb_003030_060 Hb_004916_010 Hb_004916_010 Hb_005725_210--Hb_004916_010 Hb_002818_030 Hb_002818_030 Hb_005725_210--Hb_002818_030 Hb_001828_130 Hb_001828_130 Hb_005725_210--Hb_001828_130 Hb_012779_090 Hb_012779_090 Hb_002798_070--Hb_012779_090 Hb_000243_250 Hb_000243_250 Hb_002798_070--Hb_000243_250 Hb_002798_070--Hb_002818_030 Hb_002783_040 Hb_002783_040 Hb_002798_070--Hb_002783_040 Hb_162275_050 Hb_162275_050 Hb_002798_070--Hb_162275_050 Hb_002798_070--Hb_000442_010 Hb_002263_040 Hb_002263_040 Hb_000442_010--Hb_002263_040 Hb_001104_170 Hb_001104_170 Hb_000442_010--Hb_001104_170 Hb_005389_160 Hb_005389_160 Hb_000442_010--Hb_005389_160 Hb_000442_010--Hb_000243_250 Hb_010712_050 Hb_010712_050 Hb_003030_060--Hb_010712_050 Hb_001225_040 Hb_001225_040 Hb_003030_060--Hb_001225_040 Hb_004837_180 Hb_004837_180 Hb_003030_060--Hb_004837_180 Hb_001080_230 Hb_001080_230 Hb_003030_060--Hb_001080_230 Hb_001546_080 Hb_001546_080 Hb_003030_060--Hb_001546_080 Hb_012194_030 Hb_012194_030 Hb_003030_060--Hb_012194_030 Hb_004916_010--Hb_002818_030 Hb_003849_110 Hb_003849_110 Hb_004916_010--Hb_003849_110 Hb_000029_060 Hb_000029_060 Hb_004916_010--Hb_000029_060 Hb_002234_090 Hb_002234_090 Hb_004916_010--Hb_002234_090 Hb_000015_170 Hb_000015_170 Hb_004916_010--Hb_000015_170 Hb_001716_020 Hb_001716_020 Hb_004916_010--Hb_001716_020 Hb_019863_070 Hb_019863_070 Hb_002818_030--Hb_019863_070 Hb_002818_030--Hb_003849_110 Hb_000049_260 Hb_000049_260 Hb_002818_030--Hb_000049_260 Hb_000069_310 Hb_000069_310 Hb_002818_030--Hb_000069_310 Hb_011491_010 Hb_011491_010 Hb_001828_130--Hb_011491_010 Hb_001828_130--Hb_002798_070 Hb_001828_130--Hb_000243_250 Hb_000322_150 Hb_000322_150 Hb_001828_130--Hb_000322_150 Hb_002636_100 Hb_002636_100 Hb_001828_130--Hb_002636_100 Hb_012564_030 Hb_012564_030 Hb_001828_130--Hb_012564_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.90809 16.105 6.1828 5.13937 5.4645 6.42951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.55647 9.2988 7.62021 6.23723 8.19569

CAGE analysis