Hb_005496_180

Information

Type -
Description -
Location Contig5496: 162221-164330
Sequence    

Annotation

kegg
ID rcu:RCOM_1587530
description E3 ubiquitin ligase PUB14, putative
nr
ID XP_012068226.1
description PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
swissprot
ID O22193
description U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3
trembl
ID A0A067LAU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16032 PE=4 SV=1
Gene Ontology
ID GO:0005515
description u-box domain-containing protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48235: 162271-164275 , PASA_asmbl_48236: 162687-162866
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005496_180 0.0 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
2 Hb_000953_050 0.1018277226 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
3 Hb_002572_050 0.1158996767 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
4 Hb_000805_230 0.1161717226 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
5 Hb_000120_160 0.1162924905 - - unnamed protein product [Vitis vinifera]
6 Hb_002053_130 0.1200914151 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
7 Hb_002915_070 0.1201719009 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
8 Hb_001369_570 0.1235974687 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
9 Hb_000062_080 0.1277448146 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
10 Hb_003055_140 0.1298230553 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
11 Hb_002897_050 0.1298345321 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
12 Hb_008511_100 0.1312230567 - - hypothetical protein POPTR_0009s11860g [Populus trichocarpa]
13 Hb_000215_350 0.1331178302 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
14 Hb_028207_040 0.1339120615 - - PREDICTED: beta-hexosaminidase 2 [Jatropha curcas]
15 Hb_002026_060 0.1361804485 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
16 Hb_000318_480 0.1361984737 - - PREDICTED: RING-H2 finger protein ATL65 [Jatropha curcas]
17 Hb_001288_070 0.1378404435 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
18 Hb_002249_050 0.1405328655 - - Auxin response factor, putative [Ricinus communis]
19 Hb_012107_010 0.1434464322 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
20 Hb_052764_030 0.1438674111 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]

Gene co-expression network

sample Hb_005496_180 Hb_005496_180 Hb_000953_050 Hb_000953_050 Hb_005496_180--Hb_000953_050 Hb_002572_050 Hb_002572_050 Hb_005496_180--Hb_002572_050 Hb_000805_230 Hb_000805_230 Hb_005496_180--Hb_000805_230 Hb_000120_160 Hb_000120_160 Hb_005496_180--Hb_000120_160 Hb_002053_130 Hb_002053_130 Hb_005496_180--Hb_002053_130 Hb_002915_070 Hb_002915_070 Hb_005496_180--Hb_002915_070 Hb_028207_040 Hb_028207_040 Hb_000953_050--Hb_028207_040 Hb_003055_140 Hb_003055_140 Hb_000953_050--Hb_003055_140 Hb_000953_050--Hb_002572_050 Hb_009028_010 Hb_009028_010 Hb_000953_050--Hb_009028_010 Hb_001629_060 Hb_001629_060 Hb_000953_050--Hb_001629_060 Hb_001369_570 Hb_001369_570 Hb_002572_050--Hb_001369_570 Hb_001794_060 Hb_001794_060 Hb_002572_050--Hb_001794_060 Hb_000215_350 Hb_000215_350 Hb_002572_050--Hb_000215_350 Hb_008511_100 Hb_008511_100 Hb_002572_050--Hb_008511_100 Hb_000805_230--Hb_002915_070 Hb_000179_230 Hb_000179_230 Hb_000805_230--Hb_000179_230 Hb_000805_230--Hb_000120_160 Hb_000116_210 Hb_000116_210 Hb_000805_230--Hb_000116_210 Hb_004032_310 Hb_004032_310 Hb_000805_230--Hb_004032_310 Hb_000448_060 Hb_000448_060 Hb_000805_230--Hb_000448_060 Hb_002876_250 Hb_002876_250 Hb_000120_160--Hb_002876_250 Hb_000120_160--Hb_000116_210 Hb_001288_070 Hb_001288_070 Hb_000120_160--Hb_001288_070 Hb_002154_020 Hb_002154_020 Hb_000120_160--Hb_002154_020 Hb_012107_010 Hb_012107_010 Hb_002053_130--Hb_012107_010 Hb_002639_100 Hb_002639_100 Hb_002053_130--Hb_002639_100 Hb_001944_020 Hb_001944_020 Hb_002053_130--Hb_001944_020 Hb_000179_240 Hb_000179_240 Hb_002053_130--Hb_000179_240 Hb_171900_020 Hb_171900_020 Hb_002053_130--Hb_171900_020 Hb_002915_070--Hb_000448_060 Hb_002915_070--Hb_000179_230 Hb_003752_120 Hb_003752_120 Hb_002915_070--Hb_003752_120 Hb_002915_070--Hb_004032_310 Hb_103788_010 Hb_103788_010 Hb_002915_070--Hb_103788_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.4805 115.356 28.3003 24.6741 12.4472 15.9424
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.63916 25.5744 29.3205 26.5326 21.1076

CAGE analysis