Hb_008511_100

Information

Type -
Description -
Location Contig8511: 99344-102912
Sequence    

Annotation

kegg
ID pop:POPTR_0009s11860g
description POPTRDRAFT_722038; hypothetical protein
nr
ID XP_002313048.1
description hypothetical protein POPTR_0009s11860g [Populus trichocarpa]
swissprot
ID Q8GUH2
description Uncharacterized protein At1g01500 OS=Arabidopsis thaliana GN=At1g01500 PE=2 SV=1
trembl
ID B9HRN5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s11860g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60422: 101543-101677 , PASA_asmbl_60423: 102666-102803
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008511_100 0.0 - - hypothetical protein POPTR_0009s11860g [Populus trichocarpa]
2 Hb_002097_200 0.1205509662 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
3 Hb_000953_050 0.124412577 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
4 Hb_001288_070 0.1291959531 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
5 Hb_002572_050 0.1311906887 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
6 Hb_005496_180 0.1312230567 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
7 Hb_189208_020 0.1319765012 - - LRX2, putative [Ricinus communis]
8 Hb_001862_110 0.1320325619 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
9 Hb_001794_060 0.1338952048 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000699_230 0.1353403991 - - Ankyrin repeat family protein, putative [Theobroma cacao]
11 Hb_029243_020 0.1388770257 - - ENTH/VHS/GAT family protein [Theobroma cacao]
12 Hb_003060_090 0.1392432756 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
13 Hb_005433_060 0.1396021102 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C [Jatropha curcas]
14 Hb_001488_040 0.1397815087 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
15 Hb_000347_390 0.1402885665 - - PREDICTED: exportin-T [Jatropha curcas]
16 Hb_007054_040 0.1406740086 - - PREDICTED: protein RST1 [Jatropha curcas]
17 Hb_000024_040 0.1414986777 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
18 Hb_001411_140 0.1420163717 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
19 Hb_001369_570 0.1428579395 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
20 Hb_007576_200 0.1435467567 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_008511_100 Hb_008511_100 Hb_002097_200 Hb_002097_200 Hb_008511_100--Hb_002097_200 Hb_000953_050 Hb_000953_050 Hb_008511_100--Hb_000953_050 Hb_001288_070 Hb_001288_070 Hb_008511_100--Hb_001288_070 Hb_002572_050 Hb_002572_050 Hb_008511_100--Hb_002572_050 Hb_005496_180 Hb_005496_180 Hb_008511_100--Hb_005496_180 Hb_189208_020 Hb_189208_020 Hb_008511_100--Hb_189208_020 Hb_002097_200--Hb_189208_020 Hb_088753_010 Hb_088753_010 Hb_002097_200--Hb_088753_010 Hb_000987_060 Hb_000987_060 Hb_002097_200--Hb_000987_060 Hb_010381_030 Hb_010381_030 Hb_002097_200--Hb_010381_030 Hb_003752_100 Hb_003752_100 Hb_002097_200--Hb_003752_100 Hb_028207_040 Hb_028207_040 Hb_000953_050--Hb_028207_040 Hb_000953_050--Hb_005496_180 Hb_003055_140 Hb_003055_140 Hb_000953_050--Hb_003055_140 Hb_000953_050--Hb_002572_050 Hb_009028_010 Hb_009028_010 Hb_000953_050--Hb_009028_010 Hb_001629_060 Hb_001629_060 Hb_000953_050--Hb_001629_060 Hb_000116_210 Hb_000116_210 Hb_001288_070--Hb_000116_210 Hb_000120_160 Hb_000120_160 Hb_001288_070--Hb_000120_160 Hb_000805_230 Hb_000805_230 Hb_001288_070--Hb_000805_230 Hb_000866_090 Hb_000866_090 Hb_001288_070--Hb_000866_090 Hb_002915_070 Hb_002915_070 Hb_001288_070--Hb_002915_070 Hb_002572_050--Hb_005496_180 Hb_001369_570 Hb_001369_570 Hb_002572_050--Hb_001369_570 Hb_001794_060 Hb_001794_060 Hb_002572_050--Hb_001794_060 Hb_000215_350 Hb_000215_350 Hb_002572_050--Hb_000215_350 Hb_005496_180--Hb_000805_230 Hb_005496_180--Hb_000120_160 Hb_002053_130 Hb_002053_130 Hb_005496_180--Hb_002053_130 Hb_005496_180--Hb_002915_070 Hb_001894_050 Hb_001894_050 Hb_189208_020--Hb_001894_050 Hb_003175_030 Hb_003175_030 Hb_189208_020--Hb_003175_030 Hb_005725_210 Hb_005725_210 Hb_189208_020--Hb_005725_210 Hb_006788_140 Hb_006788_140 Hb_189208_020--Hb_006788_140 Hb_001564_080 Hb_001564_080 Hb_189208_020--Hb_001564_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.02461 24.7339 3.87876 6.1359 2.88248 5.70155
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.91109 7.55242 6.50945 11.1436 6.88209

CAGE analysis