Hb_088753_010

Information

Type -
Description -
Location Contig88753: 3022-5822
Sequence    

Annotation

kegg
ID vvi:100267280
description copper amine oxidase 1-like
nr
ID XP_002277961.1
description PREDICTED: copper amine oxidase 1-like [Vitis vinifera]
swissprot
ID Q59118
description Histamine oxidase OS=Arthrobacter globiformis PE=1 SV=3
trembl
ID A0A0B0MTP9
description Copper methylamine oxidase OS=Gossypium arboreum GN=F383_25596 PE=3 SV=1
Gene Ontology
ID GO:0005507
description copper amine oxidase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61523: 5349-5463
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_088753_010 0.0 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]
2 Hb_000402_210 0.0624658735 - - hypothetical protein EUGRSUZ_B032971, partial [Eucalyptus grandis]
3 Hb_002097_200 0.1161764011 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
4 Hb_000451_070 0.1205431982 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
5 Hb_189208_020 0.1270852284 - - LRX2, putative [Ricinus communis]
6 Hb_006788_140 0.1285537932 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
7 Hb_000302_260 0.1307074656 - - hypothetical protein [Bruguiera gymnorhiza]
8 Hb_007382_120 0.1328975735 - - PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Jatropha curcas]
9 Hb_002701_220 0.1370507744 - - PREDICTED: solute carrier family 25 member 44 [Jatropha curcas]
10 Hb_002572_050 0.1379514287 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
11 Hb_028487_020 0.1424736068 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
12 Hb_002042_130 0.1446462974 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
13 Hb_001183_010 0.1506579183 - - -
14 Hb_001153_180 0.1516904524 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
15 Hb_000210_010 0.1532559642 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
16 Hb_000111_180 0.1543989038 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
17 Hb_005207_050 0.1547005204 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 39 [Jatropha curcas]
18 Hb_006538_080 0.1564511642 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
19 Hb_008511_100 0.1574076055 - - hypothetical protein POPTR_0009s11860g [Populus trichocarpa]
20 Hb_001439_230 0.1580437487 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_088753_010 Hb_088753_010 Hb_000402_210 Hb_000402_210 Hb_088753_010--Hb_000402_210 Hb_002097_200 Hb_002097_200 Hb_088753_010--Hb_002097_200 Hb_000451_070 Hb_000451_070 Hb_088753_010--Hb_000451_070 Hb_189208_020 Hb_189208_020 Hb_088753_010--Hb_189208_020 Hb_006788_140 Hb_006788_140 Hb_088753_010--Hb_006788_140 Hb_000302_260 Hb_000302_260 Hb_088753_010--Hb_000302_260 Hb_000402_210--Hb_000302_260 Hb_000402_210--Hb_000451_070 Hb_002042_130 Hb_002042_130 Hb_000402_210--Hb_002042_130 Hb_007382_120 Hb_007382_120 Hb_000402_210--Hb_007382_120 Hb_006538_080 Hb_006538_080 Hb_000402_210--Hb_006538_080 Hb_002097_200--Hb_189208_020 Hb_000987_060 Hb_000987_060 Hb_002097_200--Hb_000987_060 Hb_010381_030 Hb_010381_030 Hb_002097_200--Hb_010381_030 Hb_008511_100 Hb_008511_100 Hb_002097_200--Hb_008511_100 Hb_003752_100 Hb_003752_100 Hb_002097_200--Hb_003752_100 Hb_001894_050 Hb_001894_050 Hb_000451_070--Hb_001894_050 Hb_000451_070--Hb_189208_020 Hb_000451_070--Hb_002042_130 Hb_001153_180 Hb_001153_180 Hb_000451_070--Hb_001153_180 Hb_189208_020--Hb_001894_050 Hb_003175_030 Hb_003175_030 Hb_189208_020--Hb_003175_030 Hb_005725_210 Hb_005725_210 Hb_189208_020--Hb_005725_210 Hb_189208_020--Hb_006788_140 Hb_001564_080 Hb_001564_080 Hb_189208_020--Hb_001564_080 Hb_000019_040 Hb_000019_040 Hb_006788_140--Hb_000019_040 Hb_006788_140--Hb_000987_060 Hb_006788_140--Hb_003175_030 Hb_000976_280 Hb_000976_280 Hb_006788_140--Hb_000976_280 Hb_006788_140--Hb_002097_200 Hb_000302_260--Hb_002042_130 Hb_028487_020 Hb_028487_020 Hb_000302_260--Hb_028487_020 Hb_000302_260--Hb_189208_020 Hb_000086_340 Hb_000086_340 Hb_000302_260--Hb_000086_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.71308 31.9749 8.31331 9.61056 2.94639 6.2407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0429 24.4052 7.50131 14.1568 6.12098

CAGE analysis