Hb_000086_340

Information

Type -
Description -
Location Contig86: 272086-272493
Sequence    

Annotation

kegg
ID vvi:100253191
description uncharacterized LOC100253191
nr
ID XP_002275835.1
description PREDICTED: uncharacterized protein LOC100253191 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5C3J8
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003344 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60728: 271927-272813
cDNA
(Sanger)
(ID:Location)		 040_E22r.ab1: 272117-272813

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_340 0.0 - - PREDICTED: uncharacterized protein LOC100253191 [Vitis vinifera]
2 Hb_149714_010 0.1059725071 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
3 Hb_000302_260 0.1292788046 - - hypothetical protein [Bruguiera gymnorhiza]
4 Hb_000475_040 0.1385238391 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
5 Hb_000122_050 0.1388386989 - - conserved hypothetical protein [Ricinus communis]
6 Hb_030116_010 0.1442235981 - - F-box protein, atfbl3, putative [Ricinus communis]
7 Hb_155599_010 0.1628188087 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
8 Hb_088753_010 0.1660134458 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]
9 Hb_028487_020 0.1687338319 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
10 Hb_007403_110 0.1738855769 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 4-like [Jatropha curcas]
11 Hb_000402_210 0.1771012114 - - hypothetical protein EUGRSUZ_B032971, partial [Eucalyptus grandis]
12 Hb_009393_180 0.1788780187 - - PREDICTED: uncharacterized protein LOC101292333 [Fragaria vesca subsp. vesca]
13 Hb_000503_010 0.1802620467 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
14 Hb_004880_140 0.1815362203 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
15 Hb_000002_240 0.1836710527 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
16 Hb_189208_020 0.1841575353 - - LRX2, putative [Ricinus communis]
17 Hb_002272_080 0.1842700008 - - -
18 Hb_006909_060 0.1846244761 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
19 Hb_005306_190 0.1850108972 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
20 Hb_000210_010 0.1850718723 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_340 Hb_000086_340 Hb_149714_010 Hb_149714_010 Hb_000086_340--Hb_149714_010 Hb_000302_260 Hb_000302_260 Hb_000086_340--Hb_000302_260 Hb_000475_040 Hb_000475_040 Hb_000086_340--Hb_000475_040 Hb_000122_050 Hb_000122_050 Hb_000086_340--Hb_000122_050 Hb_030116_010 Hb_030116_010 Hb_000086_340--Hb_030116_010 Hb_155599_010 Hb_155599_010 Hb_000086_340--Hb_155599_010 Hb_149714_010--Hb_000475_040 Hb_149714_010--Hb_000122_050 Hb_149714_010--Hb_000302_260 Hb_149714_010--Hb_030116_010 Hb_000264_290 Hb_000264_290 Hb_149714_010--Hb_000264_290 Hb_002042_130 Hb_002042_130 Hb_000302_260--Hb_002042_130 Hb_000402_210 Hb_000402_210 Hb_000302_260--Hb_000402_210 Hb_028487_020 Hb_028487_020 Hb_000302_260--Hb_028487_020 Hb_189208_020 Hb_189208_020 Hb_000302_260--Hb_189208_020 Hb_088753_010 Hb_088753_010 Hb_000302_260--Hb_088753_010 Hb_000475_040--Hb_000302_260 Hb_127194_010 Hb_127194_010 Hb_000475_040--Hb_127194_010 Hb_001123_200 Hb_001123_200 Hb_000475_040--Hb_001123_200 Hb_000210_010 Hb_000210_010 Hb_000475_040--Hb_000210_010 Hb_001911_040 Hb_001911_040 Hb_000122_050--Hb_001911_040 Hb_000122_050--Hb_000302_260 Hb_000302_130 Hb_000302_130 Hb_000122_050--Hb_000302_130 Hb_009545_090 Hb_009545_090 Hb_000122_050--Hb_009545_090 Hb_000672_030 Hb_000672_030 Hb_030116_010--Hb_000672_030 Hb_009393_180 Hb_009393_180 Hb_030116_010--Hb_009393_180 Hb_000134_340 Hb_000134_340 Hb_030116_010--Hb_000134_340 Hb_030116_010--Hb_009545_090 Hb_000363_370 Hb_000363_370 Hb_030116_010--Hb_000363_370 Hb_000608_280 Hb_000608_280 Hb_030116_010--Hb_000608_280 Hb_001766_020 Hb_001766_020 Hb_155599_010--Hb_001766_020 Hb_155599_010--Hb_009393_180 Hb_000019_050 Hb_000019_050 Hb_155599_010--Hb_000019_050 Hb_003411_110 Hb_003411_110 Hb_155599_010--Hb_003411_110 Hb_000832_030 Hb_000832_030 Hb_155599_010--Hb_000832_030 Hb_000084_030 Hb_000084_030 Hb_155599_010--Hb_000084_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.8626 147.448 50.2891 45.9716 11.7453 40.9142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.318 88.4777 15.533 22.3921 8.80004

CAGE analysis