Hb_000302_130

Information

Type -
Description -
Location Contig302: 84329-88602
Sequence    

Annotation

kegg
ID fve:101303278
description trafficking protein particle complex subunit 1-like
nr
ID XP_012090163.1
description PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
swissprot
ID Q557G3
description Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum GN=trappc1-1 PE=3 SV=1
trembl
ID A0A067JEE3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26037 PE=4 SV=1
Gene Ontology
ID GO:0005829
description trafficking protein particle complex subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31779: 86228-86350 , PASA_asmbl_31780: 86450-88141
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000302_130 0.0 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
2 Hb_000264_290 0.1202001146 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]
3 Hb_006907_100 0.1375355254 - - PREDICTED: tropinone reductase-like 3 [Jatropha curcas]
4 Hb_100105_010 0.1548585384 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
5 Hb_000743_030 0.1554355187 - - NmrA-like negative transcriptional regulator family protein [Theobroma cacao]
6 Hb_000122_050 0.1588628161 - - conserved hypothetical protein [Ricinus communis]
7 Hb_012120_030 0.164345701 - - -
8 Hb_001911_040 0.1688384721 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
9 Hb_149714_010 0.1820864558 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
10 Hb_089140_120 0.1825747985 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
11 Hb_007123_060 0.1857136625 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
12 Hb_001545_050 0.1891751656 - - PREDICTED: ras-related protein Rab7 [Nicotiana sylvestris]
13 Hb_155541_010 0.1904302063 - - -
14 Hb_006570_150 0.1909637679 - - PREDICTED: uncharacterized protein LOC105635342 isoform X1 [Jatropha curcas]
15 Hb_000363_330 0.1919495022 - - -
16 Hb_001486_020 0.1928727125 - - hypothetical protein JCGZ_02719 [Jatropha curcas]
17 Hb_000152_230 0.1931241598 - - PREDICTED: uncharacterized protein LOC105648566 [Jatropha curcas]
18 Hb_004883_050 0.1937711331 - - PREDICTED: probable UDP-arabinopyranose mutase 5 isoform X2 [Vitis vinifera]
19 Hb_153258_050 0.1939317732 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
20 Hb_005000_250 0.1960192137 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 4, mitochondrial [Vitis vinifera]

Gene co-expression network

sample Hb_000302_130 Hb_000302_130 Hb_000264_290 Hb_000264_290 Hb_000302_130--Hb_000264_290 Hb_006907_100 Hb_006907_100 Hb_000302_130--Hb_006907_100 Hb_100105_010 Hb_100105_010 Hb_000302_130--Hb_100105_010 Hb_000743_030 Hb_000743_030 Hb_000302_130--Hb_000743_030 Hb_000122_050 Hb_000122_050 Hb_000302_130--Hb_000122_050 Hb_012120_030 Hb_012120_030 Hb_000302_130--Hb_012120_030 Hb_007123_060 Hb_007123_060 Hb_000264_290--Hb_007123_060 Hb_000264_290--Hb_012120_030 Hb_008667_040 Hb_008667_040 Hb_000264_290--Hb_008667_040 Hb_188209_010 Hb_188209_010 Hb_000264_290--Hb_188209_010 Hb_149714_010 Hb_149714_010 Hb_000264_290--Hb_149714_010 Hb_006907_100--Hb_000743_030 Hb_005000_250 Hb_005000_250 Hb_006907_100--Hb_005000_250 Hb_006907_100--Hb_000122_050 Hb_155541_010 Hb_155541_010 Hb_006907_100--Hb_155541_010 Hb_005928_050 Hb_005928_050 Hb_006907_100--Hb_005928_050 Hb_100105_010--Hb_008667_040 Hb_100105_010--Hb_000264_290 Hb_000152_230 Hb_000152_230 Hb_100105_010--Hb_000152_230 Hb_188996_010 Hb_188996_010 Hb_100105_010--Hb_188996_010 Hb_003902_060 Hb_003902_060 Hb_100105_010--Hb_003902_060 Hb_001911_040 Hb_001911_040 Hb_000743_030--Hb_001911_040 Hb_006570_150 Hb_006570_150 Hb_000743_030--Hb_006570_150 Hb_001221_220 Hb_001221_220 Hb_000743_030--Hb_001221_220 Hb_000538_240 Hb_000538_240 Hb_000743_030--Hb_000538_240 Hb_002631_280 Hb_002631_280 Hb_000743_030--Hb_002631_280 Hb_000422_030 Hb_000422_030 Hb_000743_030--Hb_000422_030 Hb_000086_340 Hb_000086_340 Hb_000122_050--Hb_000086_340 Hb_000122_050--Hb_001911_040 Hb_000302_260 Hb_000302_260 Hb_000122_050--Hb_000302_260 Hb_000122_050--Hb_149714_010 Hb_009545_090 Hb_009545_090 Hb_000122_050--Hb_009545_090 Hb_000186_190 Hb_000186_190 Hb_012120_030--Hb_000186_190 Hb_012120_030--Hb_007123_060 Hb_000106_130 Hb_000106_130 Hb_012120_030--Hb_000106_130 Hb_064264_010 Hb_064264_010 Hb_012120_030--Hb_064264_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.85107 2.75284 2.35126 2.87218 0.96603 1.6495
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.6025 2.13962 0.339456 0.41286 0

CAGE analysis