Hb_012120_030

Information

Type -
Description -
Location Contig12120: 20467-21125
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012120_030 0.0 - - -
2 Hb_000186_190 0.1352751216 - - PREDICTED: uncharacterized protein At4g22160 [Jatropha curcas]
3 Hb_007123_060 0.1459816291 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
4 Hb_000264_290 0.1544617499 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]
5 Hb_000106_130 0.1642032209 - - unnamed protein product [Vitis vinifera]
6 Hb_000302_130 0.164345701 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
7 Hb_064264_010 0.1645275402 - - hypothetical protein [Zea mays]
8 Hb_000326_070 0.1654763083 - - phenylalanyl-tRNA synthetase beta chain, putative [Ricinus communis]
9 Hb_000313_300 0.1659358222 - - PREDICTED: F-box protein SKIP19-like [Jatropha curcas]
10 Hb_001454_400 0.1662758556 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
11 Hb_003544_020 0.1701487165 - - PREDICTED: elongin-A [Jatropha curcas]
12 Hb_003878_010 0.1713166814 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
13 Hb_000010_210 0.1722738714 - - PREDICTED: centromere protein X [Jatropha curcas]
14 Hb_001902_130 0.1723798213 - - 60S ribosomal protein L36-2 [Morus notabilis]
15 Hb_005773_060 0.172430656 - - defender against cell death, putative [Ricinus communis]
16 Hb_011257_010 0.1728148353 - - -
17 Hb_188209_010 0.1753576336 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X2 [Jatropha curcas]
18 Hb_025236_040 0.1761932125 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001769_080 0.1768457992 - - hypothetical protein SORBIDRAFT_10g023200 [Sorghum bicolor]
20 Hb_014783_010 0.1783039011 - - cold-inducible RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_012120_030 Hb_012120_030 Hb_000186_190 Hb_000186_190 Hb_012120_030--Hb_000186_190 Hb_007123_060 Hb_007123_060 Hb_012120_030--Hb_007123_060 Hb_000264_290 Hb_000264_290 Hb_012120_030--Hb_000264_290 Hb_000106_130 Hb_000106_130 Hb_012120_030--Hb_000106_130 Hb_000302_130 Hb_000302_130 Hb_012120_030--Hb_000302_130 Hb_064264_010 Hb_064264_010 Hb_012120_030--Hb_064264_010 Hb_003544_020 Hb_003544_020 Hb_000186_190--Hb_003544_020 Hb_002289_120 Hb_002289_120 Hb_000186_190--Hb_002289_120 Hb_003878_010 Hb_003878_010 Hb_000186_190--Hb_003878_010 Hb_005773_060 Hb_005773_060 Hb_000186_190--Hb_005773_060 Hb_002811_260 Hb_002811_260 Hb_000186_190--Hb_002811_260 Hb_001817_090 Hb_001817_090 Hb_000186_190--Hb_001817_090 Hb_004883_050 Hb_004883_050 Hb_007123_060--Hb_004883_050 Hb_012760_130 Hb_012760_130 Hb_007123_060--Hb_012760_130 Hb_001545_050 Hb_001545_050 Hb_007123_060--Hb_001545_050 Hb_000327_290 Hb_000327_290 Hb_007123_060--Hb_000327_290 Hb_184570_010 Hb_184570_010 Hb_007123_060--Hb_184570_010 Hb_000264_290--Hb_000302_130 Hb_000264_290--Hb_007123_060 Hb_008667_040 Hb_008667_040 Hb_000264_290--Hb_008667_040 Hb_188209_010 Hb_188209_010 Hb_000264_290--Hb_188209_010 Hb_149714_010 Hb_149714_010 Hb_000264_290--Hb_149714_010 Hb_000313_300 Hb_000313_300 Hb_000106_130--Hb_000313_300 Hb_001357_380 Hb_001357_380 Hb_000106_130--Hb_001357_380 Hb_000211_110 Hb_000211_110 Hb_000106_130--Hb_000211_110 Hb_000785_030 Hb_000785_030 Hb_000106_130--Hb_000785_030 Hb_001894_030 Hb_001894_030 Hb_000106_130--Hb_001894_030 Hb_000174_110 Hb_000174_110 Hb_000106_130--Hb_000174_110 Hb_006907_100 Hb_006907_100 Hb_000302_130--Hb_006907_100 Hb_100105_010 Hb_100105_010 Hb_000302_130--Hb_100105_010 Hb_000743_030 Hb_000743_030 Hb_000302_130--Hb_000743_030 Hb_000122_050 Hb_000122_050 Hb_000302_130--Hb_000122_050 Hb_046049_010 Hb_046049_010 Hb_064264_010--Hb_046049_010 Hb_000101_270 Hb_000101_270 Hb_064264_010--Hb_000101_270 Hb_042083_050 Hb_042083_050 Hb_064264_010--Hb_042083_050 Hb_002868_010 Hb_002868_010 Hb_064264_010--Hb_002868_010 Hb_001946_210 Hb_001946_210 Hb_064264_010--Hb_001946_210 Hb_175215_010 Hb_175215_010 Hb_064264_010--Hb_175215_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.6774 2.10925 3.1511 3.2739 3.08359 3.61088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.8022 4.05129 0.455231 1.36227 0

CAGE analysis