Hb_001545_050

Information

Type -
Description -
Location Contig1545: 71453-79365
Sequence    

Annotation

kegg
ID mdm:103443923
description ras-related protein Rab7
nr
ID XP_009804803.1
description PREDICTED: ras-related protein Rab7 [Nicotiana sylvestris]
swissprot
ID Q43463
description Ras-related protein Rab7 OS=Glycine max PE=2 SV=1
trembl
ID A0A022RCB5
description Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a013950mg PE=3 SV=1
Gene Ontology
ID GO:0005774
description ras-related protein rab7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13352: 56078-73741
cDNA
(Sanger)
(ID:Location)		 024_C10.ab1: 71564-73741

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001545_050 0.0 - - PREDICTED: ras-related protein Rab7 [Nicotiana sylvestris]
2 Hb_000028_060 0.1076920763 - - -
3 Hb_007123_060 0.1408703992 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
4 Hb_003925_070 0.147026236 - - ATOZI1, putative [Ricinus communis]
5 Hb_153258_050 0.1533633723 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
6 Hb_001902_130 0.1605709272 - - 60S ribosomal protein L36-2 [Morus notabilis]
7 Hb_004883_050 0.1609128002 - - PREDICTED: probable UDP-arabinopyranose mutase 5 isoform X2 [Vitis vinifera]
8 Hb_133724_010 0.1661667356 - - conserved hypothetical protein [Ricinus communis]
9 Hb_076874_010 0.1686823518 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
10 Hb_089140_120 0.1701030047 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
11 Hb_000743_030 0.1733604084 - - NmrA-like negative transcriptional regulator family protein [Theobroma cacao]
12 Hb_001911_040 0.1752131439 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
13 Hb_022181_030 0.177202431 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
14 Hb_106411_010 0.1778437247 - - Ribosomal protein S25 family protein [Theobroma cacao]
15 Hb_000422_030 0.1828693305 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
16 Hb_001829_040 0.1835844429 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
17 Hb_001005_160 0.1849012536 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001722_050 0.186759508 - - calcium binding family protein [Populus trichocarpa]
19 Hb_000926_230 0.1877649957 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002388_010 0.1878740936 - - -

Gene co-expression network

sample Hb_001545_050 Hb_001545_050 Hb_000028_060 Hb_000028_060 Hb_001545_050--Hb_000028_060 Hb_007123_060 Hb_007123_060 Hb_001545_050--Hb_007123_060 Hb_003925_070 Hb_003925_070 Hb_001545_050--Hb_003925_070 Hb_153258_050 Hb_153258_050 Hb_001545_050--Hb_153258_050 Hb_001902_130 Hb_001902_130 Hb_001545_050--Hb_001902_130 Hb_004883_050 Hb_004883_050 Hb_001545_050--Hb_004883_050 Hb_000028_060--Hb_001902_130 Hb_000028_060--Hb_007123_060 Hb_000028_060--Hb_003925_070 Hb_022181_030 Hb_022181_030 Hb_000028_060--Hb_022181_030 Hb_002232_040 Hb_002232_040 Hb_000028_060--Hb_002232_040 Hb_007123_060--Hb_004883_050 Hb_012760_130 Hb_012760_130 Hb_007123_060--Hb_012760_130 Hb_000327_290 Hb_000327_290 Hb_007123_060--Hb_000327_290 Hb_184570_010 Hb_184570_010 Hb_007123_060--Hb_184570_010 Hb_012120_030 Hb_012120_030 Hb_007123_060--Hb_012120_030 Hb_076874_010 Hb_076874_010 Hb_003925_070--Hb_076874_010 Hb_000025_050 Hb_000025_050 Hb_003925_070--Hb_000025_050 Hb_106411_010 Hb_106411_010 Hb_003925_070--Hb_106411_010 Hb_004466_040 Hb_004466_040 Hb_003925_070--Hb_004466_040 Hb_086022_010 Hb_086022_010 Hb_003925_070--Hb_086022_010 Hb_070469_010 Hb_070469_010 Hb_003925_070--Hb_070469_010 Hb_000422_030 Hb_000422_030 Hb_153258_050--Hb_000422_030 Hb_001538_090 Hb_001538_090 Hb_153258_050--Hb_001538_090 Hb_000186_190 Hb_000186_190 Hb_153258_050--Hb_000186_190 Hb_156635_010 Hb_156635_010 Hb_153258_050--Hb_156635_010 Hb_000359_150 Hb_000359_150 Hb_153258_050--Hb_000359_150 Hb_003567_030 Hb_003567_030 Hb_153258_050--Hb_003567_030 Hb_011224_060 Hb_011224_060 Hb_001902_130--Hb_011224_060 Hb_001902_130--Hb_022181_030 Hb_021419_020 Hb_021419_020 Hb_001902_130--Hb_021419_020 Hb_000562_030 Hb_000562_030 Hb_001902_130--Hb_000562_030 Hb_002784_080 Hb_002784_080 Hb_001902_130--Hb_002784_080 Hb_004127_010 Hb_004127_010 Hb_001902_130--Hb_004127_010 Hb_004883_050--Hb_012760_130 Hb_001829_040 Hb_001829_040 Hb_004883_050--Hb_001829_040 Hb_001911_040 Hb_001911_040 Hb_004883_050--Hb_001911_040 Hb_133724_010 Hb_133724_010 Hb_004883_050--Hb_133724_010 Hb_059480_010 Hb_059480_010 Hb_004883_050--Hb_059480_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.60199 2.09008 4.74297 5.23228 1.59514 4.78738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.15287 4.79109 0.458585 0.717461 0.252161

CAGE analysis