Hb_153258_050

Information

Type -
Description -
Location Contig153258: 35437-40545
Sequence    

Annotation

kegg
ID pmum:103329940
description cytoskeletal protein Sojo
nr
ID XP_012083628.1
description PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LL24
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09679 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13182: 39550-40508
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153258_050 0.0 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
2 Hb_000422_030 0.1076375928 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
3 Hb_001538_090 0.1267393593 - - 40S ribosomal protein S29 [Morus notabilis]
4 Hb_000186_190 0.1297295243 - - PREDICTED: uncharacterized protein At4g22160 [Jatropha curcas]
5 Hb_156635_010 0.1362460397 - - PREDICTED: autophagy-related protein 8f [Jatropha curcas]
6 Hb_000359_150 0.1376498894 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]
7 Hb_003567_030 0.138455434 - - PREDICTED: nifU-like protein 4, mitochondrial [Jatropha curcas]
8 Hb_000331_250 0.1431172322 - - PREDICTED: mitochondrial pyruvate carrier 1 [Vitis vinifera]
9 Hb_000975_190 0.1452123257 - - histone H4 [Zea mays]
10 Hb_000085_180 0.1473879646 - - PREDICTED: syntaxin-52-like isoform X1 [Jatropha curcas]
11 Hb_001911_040 0.1474968323 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
12 Hb_000562_030 0.1497975063 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005773_060 0.1503908983 - - defender against cell death, putative [Ricinus communis]
14 Hb_002289_120 0.1505574847 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
15 Hb_000453_160 0.1511175473 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
16 Hb_001221_220 0.1517525255 - - PREDICTED: deoxycytidylate deaminase isoform X1 [Jatropha curcas]
17 Hb_003544_020 0.1527359503 - - PREDICTED: elongin-A [Jatropha curcas]
18 Hb_001269_640 0.1530895197 - - hypothetical protein CISIN_1g032720mg [Citrus sinensis]
19 Hb_001545_050 0.1533633723 - - PREDICTED: ras-related protein Rab7 [Nicotiana sylvestris]
20 Hb_006132_110 0.1554801314 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_153258_050 Hb_153258_050 Hb_000422_030 Hb_000422_030 Hb_153258_050--Hb_000422_030 Hb_001538_090 Hb_001538_090 Hb_153258_050--Hb_001538_090 Hb_000186_190 Hb_000186_190 Hb_153258_050--Hb_000186_190 Hb_156635_010 Hb_156635_010 Hb_153258_050--Hb_156635_010 Hb_000359_150 Hb_000359_150 Hb_153258_050--Hb_000359_150 Hb_003567_030 Hb_003567_030 Hb_153258_050--Hb_003567_030 Hb_000649_230 Hb_000649_230 Hb_000422_030--Hb_000649_230 Hb_001269_640 Hb_001269_640 Hb_000422_030--Hb_001269_640 Hb_000690_190 Hb_000690_190 Hb_000422_030--Hb_000690_190 Hb_000422_030--Hb_156635_010 Hb_010315_060 Hb_010315_060 Hb_000422_030--Hb_010315_060 Hb_022132_050 Hb_022132_050 Hb_000422_030--Hb_022132_050 Hb_001369_640 Hb_001369_640 Hb_001538_090--Hb_001369_640 Hb_001341_090 Hb_001341_090 Hb_001538_090--Hb_001341_090 Hb_134949_020 Hb_134949_020 Hb_001538_090--Hb_134949_020 Hb_003536_110 Hb_003536_110 Hb_001538_090--Hb_003536_110 Hb_002375_070 Hb_002375_070 Hb_001538_090--Hb_002375_070 Hb_007113_070 Hb_007113_070 Hb_001538_090--Hb_007113_070 Hb_003544_020 Hb_003544_020 Hb_000186_190--Hb_003544_020 Hb_002289_120 Hb_002289_120 Hb_000186_190--Hb_002289_120 Hb_003878_010 Hb_003878_010 Hb_000186_190--Hb_003878_010 Hb_005773_060 Hb_005773_060 Hb_000186_190--Hb_005773_060 Hb_002811_260 Hb_002811_260 Hb_000186_190--Hb_002811_260 Hb_001817_090 Hb_001817_090 Hb_000186_190--Hb_001817_090 Hb_007451_010 Hb_007451_010 Hb_156635_010--Hb_007451_010 Hb_000220_010 Hb_000220_010 Hb_156635_010--Hb_000220_010 Hb_014720_120 Hb_014720_120 Hb_156635_010--Hb_014720_120 Hb_002740_030 Hb_002740_030 Hb_156635_010--Hb_002740_030 Hb_003389_040 Hb_003389_040 Hb_156635_010--Hb_003389_040 Hb_007441_190 Hb_007441_190 Hb_156635_010--Hb_007441_190 Hb_000261_160 Hb_000261_160 Hb_000359_150--Hb_000261_160 Hb_002171_060 Hb_002171_060 Hb_000359_150--Hb_002171_060 Hb_001016_150 Hb_001016_150 Hb_000359_150--Hb_001016_150 Hb_000599_260 Hb_000599_260 Hb_000359_150--Hb_000599_260 Hb_000359_150--Hb_000690_190 Hb_004041_020 Hb_004041_020 Hb_000359_150--Hb_004041_020 Hb_002105_100 Hb_002105_100 Hb_003567_030--Hb_002105_100 Hb_171900_060 Hb_171900_060 Hb_003567_030--Hb_171900_060 Hb_002298_030 Hb_002298_030 Hb_003567_030--Hb_002298_030 Hb_000025_630 Hb_000025_630 Hb_003567_030--Hb_000025_630 Hb_000510_300 Hb_000510_300 Hb_003567_030--Hb_000510_300 Hb_012796_020 Hb_012796_020 Hb_003567_030--Hb_012796_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.531428 0.400074 0.816804 0.764639 0.255349 0.748182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.667876 0.863002 0.415674 0.195936 0.0770208

CAGE analysis