Hb_003536_110

Information

Type -
Description -
Location Contig3536: 115287-119022
Sequence    

Annotation

kegg
ID tcc:TCM_039217
description Small nuclear ribonucleoprotein F
nr
ID XP_012065638.1
description PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
swissprot
ID Q9SUM2
description Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana GN=At4g30220 PE=2 SV=1
trembl
ID A0A061GXN6
description Small nuclear ribonucleoprotein F OS=Theobroma cacao GN=TCM_039217 PE=3 SV=1
Gene Ontology
ID GO:0005730
description probable small nuclear ribonucleoprotein f

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36685: 115289-119001
cDNA
(Sanger)
(ID:Location)		 017_O10.ab1: 115297-118738 , 039_H02.ab1: 115289-118939 , 049_A16.ab1: 115295-118939

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003536_110 0.0 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
2 Hb_001538_090 0.0956427326 - - 40S ribosomal protein S29 [Morus notabilis]
3 Hb_000473_020 0.0981682449 - - expressed protein, putative [Ricinus communis]
4 Hb_031089_040 0.0986209304 - - thioredoxin H-type 1 [Hevea brasiliensis]
5 Hb_078185_010 0.1040518157 - - -
6 Hb_001699_040 0.1044765322 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
7 Hb_005867_020 0.1091281944 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]
8 Hb_026314_020 0.1148992125 - - hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
9 Hb_004306_020 0.1176271734 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
10 Hb_000080_060 0.1187489502 - - RNA polymerase I, II and III subunit RPB8, partial [Manihot esculenta]
11 Hb_002207_110 0.1188759355 - - -
12 Hb_002518_030 0.1194754826 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 3 isoform X1 [Populus euphratica]
13 Hb_000453_160 0.1208410461 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
14 Hb_005667_040 0.1213554782 - - PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
15 Hb_004784_020 0.1235675316 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
16 Hb_001124_020 0.1255006983 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
17 Hb_168054_010 0.1261804499 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
18 Hb_000083_170 0.1277683469 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
19 Hb_016604_030 0.1279422588 - - histone H4 [Zea mays]
20 Hb_001575_070 0.128158708 - - PREDICTED: uncharacterized protein LOC105639885 [Jatropha curcas]

Gene co-expression network

sample Hb_003536_110 Hb_003536_110 Hb_001538_090 Hb_001538_090 Hb_003536_110--Hb_001538_090 Hb_000473_020 Hb_000473_020 Hb_003536_110--Hb_000473_020 Hb_031089_040 Hb_031089_040 Hb_003536_110--Hb_031089_040 Hb_078185_010 Hb_078185_010 Hb_003536_110--Hb_078185_010 Hb_001699_040 Hb_001699_040 Hb_003536_110--Hb_001699_040 Hb_005867_020 Hb_005867_020 Hb_003536_110--Hb_005867_020 Hb_001369_640 Hb_001369_640 Hb_001538_090--Hb_001369_640 Hb_001341_090 Hb_001341_090 Hb_001538_090--Hb_001341_090 Hb_134949_020 Hb_134949_020 Hb_001538_090--Hb_134949_020 Hb_002375_070 Hb_002375_070 Hb_001538_090--Hb_002375_070 Hb_007113_070 Hb_007113_070 Hb_001538_090--Hb_007113_070 Hb_005667_040 Hb_005667_040 Hb_000473_020--Hb_005667_040 Hb_005000_330 Hb_005000_330 Hb_000473_020--Hb_005000_330 Hb_004195_080 Hb_004195_080 Hb_000473_020--Hb_004195_080 Hb_026314_020 Hb_026314_020 Hb_000473_020--Hb_026314_020 Hb_000359_150 Hb_000359_150 Hb_000473_020--Hb_000359_150 Hb_002207_110 Hb_002207_110 Hb_031089_040--Hb_002207_110 Hb_066768_010 Hb_066768_010 Hb_031089_040--Hb_066768_010 Hb_004784_020 Hb_004784_020 Hb_031089_040--Hb_004784_020 Hb_002296_040 Hb_002296_040 Hb_031089_040--Hb_002296_040 Hb_004502_020 Hb_004502_020 Hb_031089_040--Hb_004502_020 Hb_000003_730 Hb_000003_730 Hb_031089_040--Hb_000003_730 Hb_078185_010--Hb_004784_020 Hb_001817_090 Hb_001817_090 Hb_078185_010--Hb_001817_090 Hb_002289_120 Hb_002289_120 Hb_078185_010--Hb_002289_120 Hb_078185_010--Hb_031089_040 Hb_004306_020 Hb_004306_020 Hb_078185_010--Hb_004306_020 Hb_005278_020 Hb_005278_020 Hb_078185_010--Hb_005278_020 Hb_010180_020 Hb_010180_020 Hb_001699_040--Hb_010180_020 Hb_001936_080 Hb_001936_080 Hb_001699_040--Hb_001936_080 Hb_010180_010 Hb_010180_010 Hb_001699_040--Hb_010180_010 Hb_000457_110 Hb_000457_110 Hb_001699_040--Hb_000457_110 Hb_001998_230 Hb_001998_230 Hb_001699_040--Hb_001998_230 Hb_168054_010 Hb_168054_010 Hb_001699_040--Hb_168054_010 Hb_000083_170 Hb_000083_170 Hb_005867_020--Hb_000083_170 Hb_000479_190 Hb_000479_190 Hb_005867_020--Hb_000479_190 Hb_003502_090 Hb_003502_090 Hb_005867_020--Hb_003502_090 Hb_000326_090 Hb_000326_090 Hb_005867_020--Hb_000326_090 Hb_000656_170 Hb_000656_170 Hb_005867_020--Hb_000656_170 Hb_005867_020--Hb_002207_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.0741 16.4491 45.3189 89.7572 38.9428 99.4546
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.336 108.717 48.8453 14.9679 26.2443

CAGE analysis