Hb_007113_070

Information

Type -
Description -
Location Contig7113: 61387-64126
Sequence    

Annotation

kegg
ID rcu:RCOM_0554420
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_002525153.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9FJH0
description Ras-related protein RABA1f OS=Arabidopsis thaliana GN=RABA1F PE=2 SV=1
trembl
ID B9SGN4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0554420 PE=3 SV=1
Gene Ontology
ID GO:0005829
description ras-related protein raba1f

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55300: 61479-64124
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007113_070 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_154948_040 0.0858256587 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
3 Hb_000002_380 0.0884024965 - - PREDICTED: bet1-like SNARE 1-2 [Jatropha curcas]
4 Hb_003671_020 0.0906548011 - - calcineurin B, putative [Ricinus communis]
5 Hb_000403_060 0.0927062487 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
6 Hb_005867_020 0.0928583407 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]
7 Hb_004889_020 0.0937779361 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
8 Hb_002343_060 0.0947883414 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
9 Hb_024439_010 0.0963952544 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
10 Hb_002105_100 0.097753844 - - protein with unknown function [Ricinus communis]
11 Hb_001538_090 0.0982118368 - - 40S ribosomal protein S29 [Morus notabilis]
12 Hb_009615_070 0.0987487375 - - type X protein phosphatase-II [Populus trichocarpa]
13 Hb_000803_200 0.0987489428 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
14 Hb_000261_140 0.0989259285 - - -
15 Hb_148121_040 0.0993307559 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
16 Hb_055062_020 0.1001492807 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
17 Hb_006326_040 0.1002877714 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000656_170 0.1022553359 - - lsm1, putative [Ricinus communis]
19 Hb_004102_110 0.104261911 - - Monothiol glutaredoxin-4, putative [Ricinus communis]
20 Hb_004696_080 0.1046125197 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]

Gene co-expression network

sample Hb_007113_070 Hb_007113_070 Hb_154948_040 Hb_154948_040 Hb_007113_070--Hb_154948_040 Hb_000002_380 Hb_000002_380 Hb_007113_070--Hb_000002_380 Hb_003671_020 Hb_003671_020 Hb_007113_070--Hb_003671_020 Hb_000403_060 Hb_000403_060 Hb_007113_070--Hb_000403_060 Hb_005867_020 Hb_005867_020 Hb_007113_070--Hb_005867_020 Hb_004889_020 Hb_004889_020 Hb_007113_070--Hb_004889_020 Hb_154948_040--Hb_000002_380 Hb_017895_040 Hb_017895_040 Hb_154948_040--Hb_017895_040 Hb_000390_300 Hb_000390_300 Hb_154948_040--Hb_000390_300 Hb_002105_100 Hb_002105_100 Hb_154948_040--Hb_002105_100 Hb_045003_010 Hb_045003_010 Hb_154948_040--Hb_045003_010 Hb_007878_010 Hb_007878_010 Hb_154948_040--Hb_007878_010 Hb_000002_380--Hb_002105_100 Hb_003108_020 Hb_003108_020 Hb_000002_380--Hb_003108_020 Hb_000453_160 Hb_000453_160 Hb_000002_380--Hb_000453_160 Hb_000656_170 Hb_000656_170 Hb_000002_380--Hb_000656_170 Hb_006573_020 Hb_006573_020 Hb_000002_380--Hb_006573_020 Hb_000125_100 Hb_000125_100 Hb_003671_020--Hb_000125_100 Hb_003414_050 Hb_003414_050 Hb_003671_020--Hb_003414_050 Hb_029388_030 Hb_029388_030 Hb_003671_020--Hb_029388_030 Hb_002375_070 Hb_002375_070 Hb_003671_020--Hb_002375_070 Hb_009615_070 Hb_009615_070 Hb_003671_020--Hb_009615_070 Hb_000479_190 Hb_000479_190 Hb_003671_020--Hb_000479_190 Hb_000175_340 Hb_000175_340 Hb_000403_060--Hb_000175_340 Hb_157022_010 Hb_157022_010 Hb_000403_060--Hb_157022_010 Hb_000638_250 Hb_000638_250 Hb_000403_060--Hb_000638_250 Hb_007044_120 Hb_007044_120 Hb_000403_060--Hb_007044_120 Hb_148121_040 Hb_148121_040 Hb_000403_060--Hb_148121_040 Hb_055062_020 Hb_055062_020 Hb_000403_060--Hb_055062_020 Hb_000083_170 Hb_000083_170 Hb_005867_020--Hb_000083_170 Hb_005867_020--Hb_000479_190 Hb_003502_090 Hb_003502_090 Hb_005867_020--Hb_003502_090 Hb_000326_090 Hb_000326_090 Hb_005867_020--Hb_000326_090 Hb_005867_020--Hb_000656_170 Hb_002207_110 Hb_002207_110 Hb_005867_020--Hb_002207_110 Hb_026889_030 Hb_026889_030 Hb_004889_020--Hb_026889_030 Hb_004157_020 Hb_004157_020 Hb_004889_020--Hb_004157_020 Hb_006326_040 Hb_006326_040 Hb_004889_020--Hb_006326_040 Hb_004889_020--Hb_157022_010 Hb_000676_390 Hb_000676_390 Hb_004889_020--Hb_000676_390 Hb_008071_020 Hb_008071_020 Hb_004889_020--Hb_008071_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.1867 10.0843 26.5578 40.314 16.5979 29.4786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.6672 58.1986 40.5239 15.609 11.5006

CAGE analysis