Hb_000261_160

Information

Type -
Description -
Location Contig261: 130571-134622
Sequence    

Annotation

kegg
ID tcc:TCM_020286
description Binding isoform 1
nr
ID XP_012078824.1
description PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]
swissprot
ID F4JUL9
description Actin-related protein 2/3 complex subunit 4 OS=Arabidopsis thaliana GN=ARPC4 PE=1 SV=1
trembl
ID A0A061EK66
description Binding isoform 1 OS=Theobroma cacao GN=TCM_020286 PE=4 SV=1
Gene Ontology
ID GO:0005885
description actin-related protein 2 3 complex subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27255: 130175-134619 , PASA_asmbl_27256: 131883-132069 , PASA_asmbl_27257: 131470-131756
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_160 0.0 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]
2 Hb_002171_060 0.0630095144 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008071_020 0.0669299729 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
4 Hb_001195_480 0.0725395666 - - cop9 complex subunit, putative [Ricinus communis]
5 Hb_003992_270 0.0749087551 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
6 Hb_001931_010 0.0754323326 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
7 Hb_001279_080 0.0767292352 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
8 Hb_028396_010 0.0790542456 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
9 Hb_000359_150 0.0810934182 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]
10 Hb_001341_150 0.0829807132 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
11 Hb_002343_060 0.0831843201 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
12 Hb_000465_390 0.0832287708 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]
13 Hb_000005_090 0.0841216728 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
14 Hb_006693_020 0.0847337325 - - PREDICTED: frataxin, mitochondrial [Gossypium raimondii]
15 Hb_000317_390 0.0850622907 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
16 Hb_017895_040 0.0851417247 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
17 Hb_003057_090 0.08770559 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
18 Hb_007441_330 0.0880971662 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
19 Hb_004041_020 0.0895136569 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
20 Hb_004108_070 0.0899685097 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000261_160 Hb_000261_160 Hb_002171_060 Hb_002171_060 Hb_000261_160--Hb_002171_060 Hb_008071_020 Hb_008071_020 Hb_000261_160--Hb_008071_020 Hb_001195_480 Hb_001195_480 Hb_000261_160--Hb_001195_480 Hb_003992_270 Hb_003992_270 Hb_000261_160--Hb_003992_270 Hb_001931_010 Hb_001931_010 Hb_000261_160--Hb_001931_010 Hb_001279_080 Hb_001279_080 Hb_000261_160--Hb_001279_080 Hb_161574_020 Hb_161574_020 Hb_002171_060--Hb_161574_020 Hb_007878_010 Hb_007878_010 Hb_002171_060--Hb_007878_010 Hb_002171_060--Hb_001931_010 Hb_000390_300 Hb_000390_300 Hb_002171_060--Hb_000390_300 Hb_000005_090 Hb_000005_090 Hb_002171_060--Hb_000005_090 Hb_008071_020--Hb_001931_010 Hb_008071_020--Hb_001279_080 Hb_028396_010 Hb_028396_010 Hb_008071_020--Hb_028396_010 Hb_026053_020 Hb_026053_020 Hb_008071_020--Hb_026053_020 Hb_006326_040 Hb_006326_040 Hb_008071_020--Hb_006326_040 Hb_000045_310 Hb_000045_310 Hb_008071_020--Hb_000045_310 Hb_001534_120 Hb_001534_120 Hb_001195_480--Hb_001534_120 Hb_000656_240 Hb_000656_240 Hb_001195_480--Hb_000656_240 Hb_000815_320 Hb_000815_320 Hb_001195_480--Hb_000815_320 Hb_000529_030 Hb_000529_030 Hb_001195_480--Hb_000529_030 Hb_004453_170 Hb_004453_170 Hb_001195_480--Hb_004453_170 Hb_004096_090 Hb_004096_090 Hb_001195_480--Hb_004096_090 Hb_000527_060 Hb_000527_060 Hb_003992_270--Hb_000527_060 Hb_003992_270--Hb_008071_020 Hb_003992_270--Hb_002171_060 Hb_000457_180 Hb_000457_180 Hb_003992_270--Hb_000457_180 Hb_003992_270--Hb_001931_010 Hb_001931_010--Hb_006326_040 Hb_001341_150 Hb_001341_150 Hb_001931_010--Hb_001341_150 Hb_000505_130 Hb_000505_130 Hb_001931_010--Hb_000505_130 Hb_000566_120 Hb_000566_120 Hb_001931_010--Hb_000566_120 Hb_001931_010--Hb_001279_080 Hb_018133_020 Hb_018133_020 Hb_001279_080--Hb_018133_020 Hb_000431_070 Hb_000431_070 Hb_001279_080--Hb_000431_070 Hb_001279_080--Hb_000045_310 Hb_001279_080--Hb_000566_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4911 7.05431 21.4931 23.2072 14.0682 14.1525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.5111 38.1743 15.2984 12.2873 13.2687

CAGE analysis