Hb_002784_080

Information

Type -
Description -
Location Contig2784: 85442-88703
Sequence    

Annotation

kegg
ID rcu:RCOM_1451980
description hypothetical protein
nr
ID XP_012068692.1
description PREDICTED: DNA replication complex GINS protein PSF3-like [Jatropha curcas]
swissprot
ID Q0UPV4
description DNA replication complex GINS protein PSF3 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=PSF3 PE=3 SV=1
trembl
ID A0A067KZX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24547 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna replication complex gins protein psf3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29091: 77375-87212
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002784_080 0.0 - - PREDICTED: DNA replication complex GINS protein PSF3-like [Jatropha curcas]
2 Hb_000377_070 0.113579032 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 [Jatropha curcas]
3 Hb_011224_060 0.1138793286 - - hypothetical protein POPTR_0011s16880g [Populus trichocarpa]
4 Hb_000265_240 0.1155628006 - - PREDICTED: uncharacterized protein LOC105643590 isoform X1 [Jatropha curcas]
5 Hb_001902_130 0.1169639814 - - 60S ribosomal protein L36-2 [Morus notabilis]
6 Hb_000562_030 0.119896144 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003292_040 0.1265293344 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
8 Hb_010315_060 0.1280517621 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
9 Hb_014720_120 0.1283285667 - - Phosphoenolpyruvate/phosphate translocator 1, chloroplastic -like protein [Gossypium arboreum]
10 Hb_021419_020 0.1292904952 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
11 Hb_000690_190 0.1312651806 - - 40S ribosomal protein S7, putative [Ricinus communis]
12 Hb_004116_060 0.133901943 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
13 Hb_001329_290 0.1370486019 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
14 Hb_001564_130 0.1389613826 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_006360_030 0.1394060702 - - -
16 Hb_004122_040 0.1395119592 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
17 Hb_000331_060 0.1395135956 - - PREDICTED: 60S ribosomal protein L17-2-like isoform X2 [Jatropha curcas]
18 Hb_001195_260 0.1401037976 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
19 Hb_009775_020 0.1404036716 - - PREDICTED: vesicle transport protein GOT1B-like [Jatropha curcas]
20 Hb_097783_020 0.141357082 - - PREDICTED: small G protein signaling modulator 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002784_080 Hb_002784_080 Hb_000377_070 Hb_000377_070 Hb_002784_080--Hb_000377_070 Hb_011224_060 Hb_011224_060 Hb_002784_080--Hb_011224_060 Hb_000265_240 Hb_000265_240 Hb_002784_080--Hb_000265_240 Hb_001902_130 Hb_001902_130 Hb_002784_080--Hb_001902_130 Hb_000562_030 Hb_000562_030 Hb_002784_080--Hb_000562_030 Hb_003292_040 Hb_003292_040 Hb_002784_080--Hb_003292_040 Hb_000377_070--Hb_000265_240 Hb_005731_050 Hb_005731_050 Hb_000377_070--Hb_005731_050 Hb_002338_060 Hb_002338_060 Hb_000377_070--Hb_002338_060 Hb_001234_080 Hb_001234_080 Hb_000377_070--Hb_001234_080 Hb_001635_180 Hb_001635_180 Hb_000377_070--Hb_001635_180 Hb_004032_430 Hb_004032_430 Hb_011224_060--Hb_004032_430 Hb_003050_200 Hb_003050_200 Hb_011224_060--Hb_003050_200 Hb_011224_060--Hb_003292_040 Hb_011970_030 Hb_011970_030 Hb_011224_060--Hb_011970_030 Hb_097783_020 Hb_097783_020 Hb_011224_060--Hb_097783_020 Hb_003935_020 Hb_003935_020 Hb_011224_060--Hb_003935_020 Hb_001329_290 Hb_001329_290 Hb_000265_240--Hb_001329_290 Hb_001564_130 Hb_001564_130 Hb_000265_240--Hb_001564_130 Hb_004449_170 Hb_004449_170 Hb_000265_240--Hb_004449_170 Hb_030565_080 Hb_030565_080 Hb_000265_240--Hb_030565_080 Hb_000265_240--Hb_003292_040 Hb_001902_130--Hb_011224_060 Hb_022181_030 Hb_022181_030 Hb_001902_130--Hb_022181_030 Hb_021419_020 Hb_021419_020 Hb_001902_130--Hb_021419_020 Hb_001902_130--Hb_000562_030 Hb_004127_010 Hb_004127_010 Hb_001902_130--Hb_004127_010 Hb_005773_060 Hb_005773_060 Hb_000562_030--Hb_005773_060 Hb_002811_260 Hb_002811_260 Hb_000562_030--Hb_002811_260 Hb_000160_060 Hb_000160_060 Hb_000562_030--Hb_000160_060 Hb_000359_150 Hb_000359_150 Hb_000562_030--Hb_000359_150 Hb_003544_020 Hb_003544_020 Hb_000562_030--Hb_003544_020 Hb_000690_190 Hb_000690_190 Hb_000562_030--Hb_000690_190 Hb_003292_040--Hb_001564_130 Hb_003292_040--Hb_011970_030 Hb_000670_020 Hb_000670_020 Hb_003292_040--Hb_000670_020 Hb_000610_010 Hb_000610_010 Hb_003292_040--Hb_000610_010 Hb_003687_230 Hb_003687_230 Hb_003292_040--Hb_003687_230 Hb_002233_150 Hb_002233_150 Hb_003292_040--Hb_002233_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.87036 3.05865 8.70527 7.15626 10.3109 7.13771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.8419 11.3346 3.39159 3.52229 1.56339

CAGE analysis