Hb_000377_070

Information

Type -
Description -
Location Contig377: 137522-139919
Sequence    

Annotation

kegg
ID pop:POPTR_0006s00640g
description POPTRDRAFT_818924; oxidoreductase family protein
nr
ID XP_012074795.1
description PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 [Jatropha curcas]
swissprot
ID Q9SIE0
description Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Arabidopsis thaliana GN=ALKBH2 PE=2 SV=2
trembl
ID A0A067KKG7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08951 PE=4 SV=1
Gene Ontology
ID GO:0016706
description alpha-ketoglutarate-dependent dioxygenase alkb homolog 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38401: 139106-139895 , PASA_asmbl_38402: 137637-139040 , PASA_asmbl_38403: 137637-139245
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000377_070 0.0 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 [Jatropha curcas]
2 Hb_000265_240 0.1019300869 - - PREDICTED: uncharacterized protein LOC105643590 isoform X1 [Jatropha curcas]
3 Hb_005731_050 0.1102477378 - - hypothetical protein JCGZ_26820 [Jatropha curcas]
4 Hb_002784_080 0.113579032 - - PREDICTED: DNA replication complex GINS protein PSF3-like [Jatropha curcas]
5 Hb_002338_060 0.1168244547 - - 2Fe-2S ferredoxin [Glycine soja]
6 Hb_001234_080 0.1177681552 - - PREDICTED: eyes absent homolog 2-like isoform X2 [Musa acuminata subsp. malaccensis]
7 Hb_001635_180 0.1208602918 - - PREDICTED: F-box/FBD/LRR-repeat protein At5g53840-like [Jatropha curcas]
8 Hb_027380_060 0.1209195734 - - PREDICTED: putative ALA-interacting subunit 2 [Jatropha curcas]
9 Hb_014720_120 0.1215654017 - - Phosphoenolpyruvate/phosphate translocator 1, chloroplastic -like protein [Gossypium arboreum]
10 Hb_000960_060 0.1225355757 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
11 Hb_022318_010 0.1227373533 - - conserved hypothetical protein [Ricinus communis]
12 Hb_111844_010 0.1231177495 - - PREDICTED: uncharacterized protein LOC105632109 [Jatropha curcas]
13 Hb_002154_120 0.1238362493 - - PREDICTED: uncharacterized protein LOC105630563 [Jatropha curcas]
14 Hb_003416_010 0.1279866076 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Malus domestica]
15 Hb_002739_050 0.1304434229 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X2 [Jatropha curcas]
16 Hb_009775_020 0.1311900156 - - PREDICTED: vesicle transport protein GOT1B-like [Jatropha curcas]
17 Hb_001188_070 0.1335124689 - - PREDICTED: protein disulfide-isomerase 5-1 [Jatropha curcas]
18 Hb_001135_220 0.1351176049 - - FGFR1 oncogene partner, putative [Ricinus communis]
19 Hb_003992_270 0.1356314148 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
20 Hb_001564_130 0.1357986245 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000377_070 Hb_000377_070 Hb_000265_240 Hb_000265_240 Hb_000377_070--Hb_000265_240 Hb_005731_050 Hb_005731_050 Hb_000377_070--Hb_005731_050 Hb_002784_080 Hb_002784_080 Hb_000377_070--Hb_002784_080 Hb_002338_060 Hb_002338_060 Hb_000377_070--Hb_002338_060 Hb_001234_080 Hb_001234_080 Hb_000377_070--Hb_001234_080 Hb_001635_180 Hb_001635_180 Hb_000377_070--Hb_001635_180 Hb_001329_290 Hb_001329_290 Hb_000265_240--Hb_001329_290 Hb_001564_130 Hb_001564_130 Hb_000265_240--Hb_001564_130 Hb_004449_170 Hb_004449_170 Hb_000265_240--Hb_004449_170 Hb_030565_080 Hb_030565_080 Hb_000265_240--Hb_030565_080 Hb_003292_040 Hb_003292_040 Hb_000265_240--Hb_003292_040 Hb_000960_060 Hb_000960_060 Hb_005731_050--Hb_000960_060 Hb_004108_070 Hb_004108_070 Hb_005731_050--Hb_004108_070 Hb_000111_380 Hb_000111_380 Hb_005731_050--Hb_000111_380 Hb_002863_050 Hb_002863_050 Hb_005731_050--Hb_002863_050 Hb_033594_120 Hb_033594_120 Hb_005731_050--Hb_033594_120 Hb_003428_030 Hb_003428_030 Hb_005731_050--Hb_003428_030 Hb_011224_060 Hb_011224_060 Hb_002784_080--Hb_011224_060 Hb_002784_080--Hb_000265_240 Hb_001902_130 Hb_001902_130 Hb_002784_080--Hb_001902_130 Hb_000562_030 Hb_000562_030 Hb_002784_080--Hb_000562_030 Hb_002784_080--Hb_003292_040 Hb_002338_060--Hb_000265_240 Hb_007763_040 Hb_007763_040 Hb_002338_060--Hb_007763_040 Hb_002338_060--Hb_030565_080 Hb_002338_060--Hb_001234_080 Hb_129924_010 Hb_129924_010 Hb_002338_060--Hb_129924_010 Hb_028227_020 Hb_028227_020 Hb_001234_080--Hb_028227_020 Hb_001234_080--Hb_000960_060 Hb_001489_060 Hb_001489_060 Hb_001234_080--Hb_001489_060 Hb_009694_010 Hb_009694_010 Hb_001234_080--Hb_009694_010 Hb_001512_060 Hb_001512_060 Hb_001234_080--Hb_001512_060 Hb_001234_080--Hb_001564_130 Hb_120410_010 Hb_120410_010 Hb_001635_180--Hb_120410_010 Hb_002346_020 Hb_002346_020 Hb_001635_180--Hb_002346_020 Hb_005697_060 Hb_005697_060 Hb_001635_180--Hb_005697_060 Hb_002530_030 Hb_002530_030 Hb_001635_180--Hb_002530_030 Hb_001635_180--Hb_003428_030 Hb_003417_020 Hb_003417_020 Hb_001635_180--Hb_003417_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.46079 2.36168 6.46136 6.94773 11.3861 5.31345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.91332 10.0261 3.83255 3.054 4.2624

CAGE analysis