Hb_012760_130

Information

Type -
Description -
Location Contig12760: 80018-82712
Sequence    

Annotation

kegg
ID pop:POPTR_0005s11090g
description hypothetical protein
nr
ID XP_012088474.1
description PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JMB9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25356 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08432: 79964-83328
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012760_130 0.0 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
2 Hb_004883_050 0.0926983936 - - PREDICTED: probable UDP-arabinopyranose mutase 5 isoform X2 [Vitis vinifera]
3 Hb_000416_070 0.1127995504 - - hypothetical protein JCGZ_21620 [Jatropha curcas]
4 Hb_007123_060 0.1306169596 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
5 Hb_005731_120 0.139136066 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20 [Jatropha curcas]
6 Hb_001287_080 0.1419011865 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003498_090 0.1435950241 - - hypothetical protein RCOM_0867850 [Ricinus communis]
8 Hb_085972_010 0.1445518242 transcription factor TF Family: NAC NAC transcription factor 066 [Jatropha curcas]
9 Hb_003038_220 0.1445520965 - - eukaryotic translation initiation factor 2 gamma subunit, putative [Ricinus communis]
10 Hb_000107_200 0.1473665247 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
11 Hb_001911_040 0.1484192911 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
12 Hb_059480_010 0.1488337987 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
13 Hb_008643_040 0.1489674006 - - PREDICTED: jacalin-related lectin 3-like [Jatropha curcas]
14 Hb_060715_010 0.1495920061 - - PREDICTED: notchless protein homolog [Gossypium raimondii]
15 Hb_003992_040 0.1496478448 - - Post-illumination chlorophyll fluorescence increase isoform 5 [Theobroma cacao]
16 Hb_000249_070 0.1505997421 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
17 Hb_001842_100 0.1507087942 rubber biosynthesis Gene Name: Dimethyallyltransferase hypothetical protein JCGZ_10905 [Jatropha curcas]
18 Hb_002687_080 0.1509708318 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
19 Hb_000167_080 0.1516072496 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
20 Hb_001829_040 0.1519390672 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]

Gene co-expression network

sample Hb_012760_130 Hb_012760_130 Hb_004883_050 Hb_004883_050 Hb_012760_130--Hb_004883_050 Hb_000416_070 Hb_000416_070 Hb_012760_130--Hb_000416_070 Hb_007123_060 Hb_007123_060 Hb_012760_130--Hb_007123_060 Hb_005731_120 Hb_005731_120 Hb_012760_130--Hb_005731_120 Hb_001287_080 Hb_001287_080 Hb_012760_130--Hb_001287_080 Hb_003498_090 Hb_003498_090 Hb_012760_130--Hb_003498_090 Hb_004883_050--Hb_007123_060 Hb_001829_040 Hb_001829_040 Hb_004883_050--Hb_001829_040 Hb_001911_040 Hb_001911_040 Hb_004883_050--Hb_001911_040 Hb_133724_010 Hb_133724_010 Hb_004883_050--Hb_133724_010 Hb_059480_010 Hb_059480_010 Hb_004883_050--Hb_059480_010 Hb_184570_010 Hb_184570_010 Hb_000416_070--Hb_184570_010 Hb_000069_160 Hb_000069_160 Hb_000416_070--Hb_000069_160 Hb_140291_010 Hb_140291_010 Hb_000416_070--Hb_140291_010 Hb_004934_070 Hb_004934_070 Hb_000416_070--Hb_004934_070 Hb_002687_080 Hb_002687_080 Hb_000416_070--Hb_002687_080 Hb_001545_050 Hb_001545_050 Hb_007123_060--Hb_001545_050 Hb_000327_290 Hb_000327_290 Hb_007123_060--Hb_000327_290 Hb_007123_060--Hb_184570_010 Hb_012120_030 Hb_012120_030 Hb_007123_060--Hb_012120_030 Hb_144528_010 Hb_144528_010 Hb_005731_120--Hb_144528_010 Hb_002235_170 Hb_002235_170 Hb_005731_120--Hb_002235_170 Hb_005291_030 Hb_005291_030 Hb_005731_120--Hb_005291_030 Hb_005914_080 Hb_005914_080 Hb_005731_120--Hb_005914_080 Hb_000031_220 Hb_000031_220 Hb_005731_120--Hb_000031_220 Hb_020665_040 Hb_020665_040 Hb_005731_120--Hb_020665_040 Hb_002271_020 Hb_002271_020 Hb_001287_080--Hb_002271_020 Hb_143398_010 Hb_143398_010 Hb_001287_080--Hb_143398_010 Hb_001287_080--Hb_005291_030 Hb_001357_150 Hb_001357_150 Hb_001287_080--Hb_001357_150 Hb_033594_120 Hb_033594_120 Hb_001287_080--Hb_033594_120 Hb_007451_010 Hb_007451_010 Hb_001287_080--Hb_007451_010 Hb_010997_080 Hb_010997_080 Hb_003498_090--Hb_010997_080 Hb_008643_040 Hb_008643_040 Hb_003498_090--Hb_008643_040 Hb_000125_130 Hb_000125_130 Hb_003498_090--Hb_000125_130 Hb_010712_030 Hb_010712_030 Hb_003498_090--Hb_010712_030 Hb_001430_120 Hb_001430_120 Hb_003498_090--Hb_001430_120 Hb_000343_160 Hb_000343_160 Hb_003498_090--Hb_000343_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.68135 2.22951 1.05308 3.28335 1.03009 3.89905
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.61986 2.12803 0.608495 0.952015 0.808897

CAGE analysis