Hb_000416_070

Information

Type -
Description -
Location Contig416: 68956-69264
Sequence    

Annotation

kegg
ID pop:POPTR_0004s06130g
description hypothetical protein
nr
ID KDP21149.1
description hypothetical protein JCGZ_21620 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41147: 68790-68900
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000416_070 0.0 - - hypothetical protein JCGZ_21620 [Jatropha curcas]
2 Hb_184570_010 0.0917444846 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
3 Hb_000069_160 0.1063207065 - - -
4 Hb_140291_010 0.1066494741 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
5 Hb_012760_130 0.1127995504 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
6 Hb_004934_070 0.120939703 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
7 Hb_002687_080 0.1240585549 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
8 Hb_002271_020 0.127787427 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
9 Hb_008643_040 0.1282091917 - - PREDICTED: jacalin-related lectin 3-like [Jatropha curcas]
10 Hb_150360_010 0.1292941803 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
11 Hb_005862_010 0.1295087317 - - PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
12 Hb_001287_080 0.1315619132 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000183_040 0.1319250523 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
14 Hb_187739_020 0.131928495 - - PREDICTED: B2 protein [Jatropha curcas]
15 Hb_010180_010 0.1329450923 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
16 Hb_020400_030 0.1337865416 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
17 Hb_137403_010 0.1342322937 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
18 Hb_003498_090 0.1349372877 - - hypothetical protein RCOM_0867850 [Ricinus communis]
19 Hb_000107_200 0.1355282584 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
20 Hb_050455_010 0.1365554521 - - PREDICTED: prosaposin isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000416_070 Hb_000416_070 Hb_184570_010 Hb_184570_010 Hb_000416_070--Hb_184570_010 Hb_000069_160 Hb_000069_160 Hb_000416_070--Hb_000069_160 Hb_140291_010 Hb_140291_010 Hb_000416_070--Hb_140291_010 Hb_012760_130 Hb_012760_130 Hb_000416_070--Hb_012760_130 Hb_004934_070 Hb_004934_070 Hb_000416_070--Hb_004934_070 Hb_002687_080 Hb_002687_080 Hb_000416_070--Hb_002687_080 Hb_003011_040 Hb_003011_040 Hb_184570_010--Hb_003011_040 Hb_003363_120 Hb_003363_120 Hb_184570_010--Hb_003363_120 Hb_003878_010 Hb_003878_010 Hb_184570_010--Hb_003878_010 Hb_000155_180 Hb_000155_180 Hb_184570_010--Hb_000155_180 Hb_004223_220 Hb_004223_220 Hb_184570_010--Hb_004223_220 Hb_050455_010 Hb_050455_010 Hb_000069_160--Hb_050455_010 Hb_002217_310 Hb_002217_310 Hb_000069_160--Hb_002217_310 Hb_002982_040 Hb_002982_040 Hb_000069_160--Hb_002982_040 Hb_003847_080 Hb_003847_080 Hb_000069_160--Hb_003847_080 Hb_000849_070 Hb_000849_070 Hb_000069_160--Hb_000849_070 Hb_003502_080 Hb_003502_080 Hb_000069_160--Hb_003502_080 Hb_096490_020 Hb_096490_020 Hb_140291_010--Hb_096490_020 Hb_041392_010 Hb_041392_010 Hb_140291_010--Hb_041392_010 Hb_002007_180 Hb_002007_180 Hb_140291_010--Hb_002007_180 Hb_000812_040 Hb_000812_040 Hb_140291_010--Hb_000812_040 Hb_003656_140 Hb_003656_140 Hb_140291_010--Hb_003656_140 Hb_004883_050 Hb_004883_050 Hb_012760_130--Hb_004883_050 Hb_007123_060 Hb_007123_060 Hb_012760_130--Hb_007123_060 Hb_005731_120 Hb_005731_120 Hb_012760_130--Hb_005731_120 Hb_001287_080 Hb_001287_080 Hb_012760_130--Hb_001287_080 Hb_003498_090 Hb_003498_090 Hb_012760_130--Hb_003498_090 Hb_005862_010 Hb_005862_010 Hb_004934_070--Hb_005862_010 Hb_000785_080 Hb_000785_080 Hb_004934_070--Hb_000785_080 Hb_002374_020 Hb_002374_020 Hb_004934_070--Hb_002374_020 Hb_003641_060 Hb_003641_060 Hb_004934_070--Hb_003641_060 Hb_004881_020 Hb_004881_020 Hb_004934_070--Hb_004881_020 Hb_144598_030 Hb_144598_030 Hb_004934_070--Hb_144598_030 Hb_002687_080--Hb_140291_010 Hb_152554_010 Hb_152554_010 Hb_002687_080--Hb_152554_010 Hb_099878_050 Hb_099878_050 Hb_002687_080--Hb_099878_050 Hb_000327_290 Hb_000327_290 Hb_002687_080--Hb_000327_290 Hb_000136_180 Hb_000136_180 Hb_002687_080--Hb_000136_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.19224 8.14831 5.72051 15.2269 8.5939 24.2112
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0867 11.7735 5.92941 6.57471 2.1495

CAGE analysis