Hb_004223_220

Information

Type -
Description -
Location Contig4223: 156550-158991
Sequence    

Annotation

kegg
ID rcu:RCOM_1597240
description hypothetical protein
nr
ID XP_012073831.1
description PREDICTED: uncharacterized protein LOC105635366 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KL18
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08237 PE=4 SV=1
Gene Ontology
ID GO:0016779
description probable dna-directed rna polymerase i subunit rpa43 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41771: 157316-157709
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004223_220 0.0 - - PREDICTED: uncharacterized protein LOC105635366 isoform X1 [Jatropha curcas]
2 Hb_003011_040 0.0750609741 - - PREDICTED: uncharacterized protein LOC102629536 isoform X2 [Citrus sinensis]
3 Hb_093666_020 0.0937862165 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
4 Hb_004502_020 0.0967794181 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
5 Hb_002296_040 0.1058775931 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
6 Hb_000155_180 0.1082611351 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
7 Hb_184570_010 0.1105572026 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
8 Hb_078185_010 0.1147640294 - - -
9 Hb_001269_320 0.117826994 - - 40S ribosomal protein S12A [Hevea brasiliensis]
10 Hb_000505_140 0.1202734635 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
11 Hb_000003_730 0.1224782183 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
12 Hb_005667_040 0.1225865092 - - PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
13 Hb_007441_270 0.1234530548 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
14 Hb_031089_040 0.1236641931 - - thioredoxin H-type 1 [Hevea brasiliensis]
15 Hb_086703_010 0.1244245034 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
16 Hb_010180_010 0.1246836711 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
17 Hb_000080_060 0.1277017681 - - RNA polymerase I, II and III subunit RPB8, partial [Manihot esculenta]
18 Hb_002260_150 0.127756206 - - PREDICTED: uncharacterized protein LOC105647187 isoform X2 [Jatropha curcas]
19 Hb_001935_130 0.1278321442 - - PREDICTED: uncharacterized protein LOC105643176 [Jatropha curcas]
20 Hb_003878_010 0.1307614265 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]

Gene co-expression network

sample Hb_004223_220 Hb_004223_220 Hb_003011_040 Hb_003011_040 Hb_004223_220--Hb_003011_040 Hb_093666_020 Hb_093666_020 Hb_004223_220--Hb_093666_020 Hb_004502_020 Hb_004502_020 Hb_004223_220--Hb_004502_020 Hb_002296_040 Hb_002296_040 Hb_004223_220--Hb_002296_040 Hb_000155_180 Hb_000155_180 Hb_004223_220--Hb_000155_180 Hb_184570_010 Hb_184570_010 Hb_004223_220--Hb_184570_010 Hb_003011_040--Hb_000155_180 Hb_003011_040--Hb_093666_020 Hb_010180_010 Hb_010180_010 Hb_003011_040--Hb_010180_010 Hb_005389_150 Hb_005389_150 Hb_003011_040--Hb_005389_150 Hb_001269_320 Hb_001269_320 Hb_003011_040--Hb_001269_320 Hb_001279_070 Hb_001279_070 Hb_093666_020--Hb_001279_070 Hb_093666_020--Hb_004502_020 Hb_093666_020--Hb_001269_320 Hb_000505_140 Hb_000505_140 Hb_093666_020--Hb_000505_140 Hb_004502_020--Hb_000505_140 Hb_031089_040 Hb_031089_040 Hb_004502_020--Hb_031089_040 Hb_004502_020--Hb_000155_180 Hb_000003_730 Hb_000003_730 Hb_004502_020--Hb_000003_730 Hb_002207_110 Hb_002207_110 Hb_004502_020--Hb_002207_110 Hb_032202_090 Hb_032202_090 Hb_004502_020--Hb_032202_090 Hb_002596_040 Hb_002596_040 Hb_002296_040--Hb_002596_040 Hb_002662_030 Hb_002662_030 Hb_002296_040--Hb_002662_030 Hb_002260_150 Hb_002260_150 Hb_002296_040--Hb_002260_150 Hb_000326_090 Hb_000326_090 Hb_002296_040--Hb_000326_090 Hb_000707_030 Hb_000707_030 Hb_002296_040--Hb_000707_030 Hb_007735_030 Hb_007735_030 Hb_002296_040--Hb_007735_030 Hb_001377_180 Hb_001377_180 Hb_000155_180--Hb_001377_180 Hb_000771_100 Hb_000771_100 Hb_000155_180--Hb_000771_100 Hb_086703_010 Hb_086703_010 Hb_000155_180--Hb_086703_010 Hb_002272_260 Hb_002272_260 Hb_000155_180--Hb_002272_260 Hb_000416_070 Hb_000416_070 Hb_184570_010--Hb_000416_070 Hb_184570_010--Hb_003011_040 Hb_003363_120 Hb_003363_120 Hb_184570_010--Hb_003363_120 Hb_003878_010 Hb_003878_010 Hb_184570_010--Hb_003878_010 Hb_184570_010--Hb_000155_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.845115 0.251997 0.543873 1.40136 1.12615 2.07169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.35952 2.35097 0.377649 0.814708 0.418235

CAGE analysis