Hb_002260_150

Information

Type -
Description -
Location Contig2260: 216677-218567
Sequence    

Annotation

kegg
ID rcu:RCOM_1636060
description hypothetical protein
nr
ID XP_012088580.1
description PREDICTED: uncharacterized protein LOC105647187 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RU94
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1636060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23515: 216693-218371 , PASA_asmbl_23516: 216723-218403
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002260_150 0.0 - - PREDICTED: uncharacterized protein LOC105647187 isoform X2 [Jatropha curcas]
2 Hb_002296_040 0.0784849048 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
3 Hb_005615_080 0.0898903242 - - PREDICTED: uncharacterized protein LOC105649609 [Jatropha curcas]
4 Hb_002596_040 0.0906036095 - - PREDICTED: uncharacterized protein LOC105645264 isoform X2 [Jatropha curcas]
5 Hb_010423_040 0.0928934251 - - hypothetical protein JCGZ_17463 [Jatropha curcas]
6 Hb_000326_090 0.0961699468 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
7 Hb_003633_030 0.10098347 - - f-actin capping protein alpha, putative [Ricinus communis]
8 Hb_002893_080 0.1012672729 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
9 Hb_000331_450 0.1024123007 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
10 Hb_007735_030 0.1029381041 - - Calcium-binding EF-hand family protein isoform 1 [Theobroma cacao]
11 Hb_008406_190 0.1082188636 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
12 Hb_033594_120 0.1096801089 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
13 Hb_000707_030 0.1109240645 - - PREDICTED: probable proteasome inhibitor [Vitis vinifera]
14 Hb_006816_210 0.1111568383 - - PREDICTED: GTP-binding protein SAR1A [Nelumbo nucifera]
15 Hb_001421_060 0.111291293 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
16 Hb_004800_120 0.1116960661 - - PREDICTED: maf-like protein DDB_G0281937 isoform X1 [Jatropha curcas]
17 Hb_021238_050 0.1121564735 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005914_080 0.1144521121 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]
19 Hb_008695_040 0.116108453 - - PREDICTED: small ribosomal subunit protein S13, mitochondrial-like [Jatropha curcas]
20 Hb_000030_220 0.1168439884 - - PREDICTED: uncharacterized protein LOC105650405 [Jatropha curcas]

Gene co-expression network

sample Hb_002260_150 Hb_002260_150 Hb_002296_040 Hb_002296_040 Hb_002260_150--Hb_002296_040 Hb_005615_080 Hb_005615_080 Hb_002260_150--Hb_005615_080 Hb_002596_040 Hb_002596_040 Hb_002260_150--Hb_002596_040 Hb_010423_040 Hb_010423_040 Hb_002260_150--Hb_010423_040 Hb_000326_090 Hb_000326_090 Hb_002260_150--Hb_000326_090 Hb_003633_030 Hb_003633_030 Hb_002260_150--Hb_003633_030 Hb_002296_040--Hb_002596_040 Hb_002662_030 Hb_002662_030 Hb_002296_040--Hb_002662_030 Hb_002296_040--Hb_000326_090 Hb_000707_030 Hb_000707_030 Hb_002296_040--Hb_000707_030 Hb_007735_030 Hb_007735_030 Hb_002296_040--Hb_007735_030 Hb_005615_080--Hb_010423_040 Hb_005615_080--Hb_002296_040 Hb_001009_300 Hb_001009_300 Hb_005615_080--Hb_001009_300 Hb_021238_050 Hb_021238_050 Hb_005615_080--Hb_021238_050 Hb_000003_730 Hb_000003_730 Hb_005615_080--Hb_000003_730 Hb_076693_030 Hb_076693_030 Hb_002596_040--Hb_076693_030 Hb_008695_040 Hb_008695_040 Hb_002596_040--Hb_008695_040 Hb_001421_060 Hb_001421_060 Hb_002596_040--Hb_001421_060 Hb_010180_010 Hb_010180_010 Hb_002596_040--Hb_010180_010 Hb_002596_040--Hb_002662_030 Hb_008406_190 Hb_008406_190 Hb_010423_040--Hb_008406_190 Hb_003333_060 Hb_003333_060 Hb_010423_040--Hb_003333_060 Hb_010423_040--Hb_002296_040 Hb_000103_090 Hb_000103_090 Hb_010423_040--Hb_000103_090 Hb_000103_080 Hb_000103_080 Hb_010423_040--Hb_000103_080 Hb_000083_170 Hb_000083_170 Hb_000326_090--Hb_000083_170 Hb_066768_010 Hb_066768_010 Hb_000326_090--Hb_066768_010 Hb_005867_020 Hb_005867_020 Hb_000326_090--Hb_005867_020 Hb_031089_040 Hb_031089_040 Hb_000326_090--Hb_031089_040 Hb_001250_060 Hb_001250_060 Hb_000326_090--Hb_001250_060 Hb_033594_120 Hb_033594_120 Hb_003633_030--Hb_033594_120 Hb_000599_300 Hb_000599_300 Hb_003633_030--Hb_000599_300 Hb_007017_030 Hb_007017_030 Hb_003633_030--Hb_007017_030 Hb_002893_080 Hb_002893_080 Hb_003633_030--Hb_002893_080 Hb_000421_220 Hb_000421_220 Hb_003633_030--Hb_000421_220 Hb_001279_150 Hb_001279_150 Hb_003633_030--Hb_001279_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.5029 17.2124 13.8176 66.7583 41.9203 75.1825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
83.9237 94.6778 32.4818 49.0616 35.5754

CAGE analysis