Hb_099878_050

Information

Type -
Description -
Location Contig99878: 85176-85774
Sequence    

Annotation

kegg
ID pop:POPTR_0001s22420g
description POPTRDRAFT_1067757; hypothetical protein
nr
ID XP_011021426.1
description PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
swissprot
ID Q8BJM3
description Coiled-coil domain-containing protein R3HCC1L OS=Mus musculus GN=R3hcc1l PE=2 SV=1
trembl
ID B9GHM5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s22420g PE=4 SV=1
Gene Ontology
ID GO:0000166
description coiled-coil domain-containing protein r3hcc1l isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_099878_050 0.0 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
2 Hb_106415_010 0.1098802989 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
3 Hb_075764_010 0.1156419948 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
4 Hb_012506_010 0.1235494221 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
5 Hb_013358_090 0.1285497652 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
6 Hb_133724_010 0.129445738 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002687_080 0.1311309206 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
8 Hb_090158_010 0.1336419271 - - hypothetical protein RCOM_1968400 [Ricinus communis]
9 Hb_088163_010 0.1348081743 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
10 Hb_002192_090 0.1358452605 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
11 Hb_146675_010 0.1376039955 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier-like isoform X2 [Malus domestica]
12 Hb_077573_010 0.1376162905 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_000053_030 0.1448892272 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
14 Hb_181328_010 0.1449815603 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_001135_140 0.1475373328 - - PREDICTED: serine/threonine-protein kinase PBS1-like [Malus domestica]
16 Hb_038237_010 0.1477777163 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
17 Hb_165402_010 0.1514556666 - - PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]
18 Hb_002611_020 0.151828635 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
19 Hb_000676_080 0.1519630194 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
20 Hb_000074_060 0.1536116879 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]

Gene co-expression network

sample Hb_099878_050 Hb_099878_050 Hb_106415_010 Hb_106415_010 Hb_099878_050--Hb_106415_010 Hb_075764_010 Hb_075764_010 Hb_099878_050--Hb_075764_010 Hb_012506_010 Hb_012506_010 Hb_099878_050--Hb_012506_010 Hb_013358_090 Hb_013358_090 Hb_099878_050--Hb_013358_090 Hb_133724_010 Hb_133724_010 Hb_099878_050--Hb_133724_010 Hb_002687_080 Hb_002687_080 Hb_099878_050--Hb_002687_080 Hb_033385_010 Hb_033385_010 Hb_106415_010--Hb_033385_010 Hb_007083_020 Hb_007083_020 Hb_106415_010--Hb_007083_020 Hb_019053_010 Hb_019053_010 Hb_106415_010--Hb_019053_010 Hb_007333_040 Hb_007333_040 Hb_106415_010--Hb_007333_040 Hb_000825_030 Hb_000825_030 Hb_106415_010--Hb_000825_030 Hb_088163_010 Hb_088163_010 Hb_075764_010--Hb_088163_010 Hb_000230_180 Hb_000230_180 Hb_075764_010--Hb_000230_180 Hb_002611_020 Hb_002611_020 Hb_075764_010--Hb_002611_020 Hb_165402_010 Hb_165402_010 Hb_075764_010--Hb_165402_010 Hb_002122_010 Hb_002122_010 Hb_075764_010--Hb_002122_010 Hb_077573_010 Hb_077573_010 Hb_012506_010--Hb_077573_010 Hb_131035_010 Hb_131035_010 Hb_012506_010--Hb_131035_010 Hb_146081_010 Hb_146081_010 Hb_012506_010--Hb_146081_010 Hb_009787_050 Hb_009787_050 Hb_012506_010--Hb_009787_050 Hb_000836_550 Hb_000836_550 Hb_012506_010--Hb_000836_550 Hb_181328_010 Hb_181328_010 Hb_013358_090--Hb_181328_010 Hb_013358_080 Hb_013358_080 Hb_013358_090--Hb_013358_080 Hb_000053_030 Hb_000053_030 Hb_013358_090--Hb_000053_030 Hb_002027_180 Hb_002027_180 Hb_013358_090--Hb_002027_180 Hb_004040_030 Hb_004040_030 Hb_013358_090--Hb_004040_030 Hb_002192_090 Hb_002192_090 Hb_133724_010--Hb_002192_090 Hb_002388_010 Hb_002388_010 Hb_133724_010--Hb_002388_010 Hb_001829_040 Hb_001829_040 Hb_133724_010--Hb_001829_040 Hb_130613_010 Hb_130613_010 Hb_133724_010--Hb_130613_010 Hb_001518_070 Hb_001518_070 Hb_133724_010--Hb_001518_070 Hb_000416_070 Hb_000416_070 Hb_002687_080--Hb_000416_070 Hb_140291_010 Hb_140291_010 Hb_002687_080--Hb_140291_010 Hb_152554_010 Hb_152554_010 Hb_002687_080--Hb_152554_010 Hb_000327_290 Hb_000327_290 Hb_002687_080--Hb_000327_290 Hb_000136_180 Hb_000136_180 Hb_002687_080--Hb_000136_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.566 18.6239 23.841 73.4499 14.9507 75.1077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.516 18.251 8.086 29.5783 8.12969

CAGE analysis