Hb_077573_010

Information

Type -
Description -
Location Contig77573: 66-1338
Sequence    

Annotation

kegg
ID rcu:RCOM_1494410
description serine-threonine protein kinase, plant-type, putative (EC:2.7.10.2)
nr
ID XP_002516047.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q1PEM5
description Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2
trembl
ID B9RQM8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494410 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57785: 261-1191
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_077573_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_012506_010 0.1132964895 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
3 Hb_165402_010 0.1296976668 - - PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]
4 Hb_106688_010 0.1375796364 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
5 Hb_099878_050 0.1376162905 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
6 Hb_181441_010 0.1478875491 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
7 Hb_009247_010 0.1528103595 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
8 Hb_013358_090 0.1529742823 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
9 Hb_131035_010 0.1546734483 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_040747_010 0.1615063386 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
11 Hb_000116_150 0.1638978534 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
12 Hb_000836_550 0.1662340504 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
13 Hb_075764_010 0.1697747387 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
14 Hb_088163_010 0.1710597192 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
15 Hb_027760_070 0.1770364838 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
16 Hb_004040_030 0.1779424046 - - PREDICTED: probable inactive purple acid phosphatase 28 isoform X2 [Jatropha curcas]
17 Hb_004040_040 0.1785470633 desease resistance Gene Name: ABC_tran hypothetical protein POPTR_0006s07370g [Populus trichocarpa]
18 Hb_013358_080 0.1790882934 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Jatropha curcas]
19 Hb_146081_010 0.181327049 - - PREDICTED: protein SCAI [Jatropha curcas]
20 Hb_007333_040 0.1839478121 - - PREDICTED: proline-rich receptor-like protein kinase PERK1-like [Glycine max]

Gene co-expression network

sample Hb_077573_010 Hb_077573_010 Hb_012506_010 Hb_012506_010 Hb_077573_010--Hb_012506_010 Hb_165402_010 Hb_165402_010 Hb_077573_010--Hb_165402_010 Hb_106688_010 Hb_106688_010 Hb_077573_010--Hb_106688_010 Hb_099878_050 Hb_099878_050 Hb_077573_010--Hb_099878_050 Hb_181441_010 Hb_181441_010 Hb_077573_010--Hb_181441_010 Hb_009247_010 Hb_009247_010 Hb_077573_010--Hb_009247_010 Hb_012506_010--Hb_099878_050 Hb_131035_010 Hb_131035_010 Hb_012506_010--Hb_131035_010 Hb_146081_010 Hb_146081_010 Hb_012506_010--Hb_146081_010 Hb_009787_050 Hb_009787_050 Hb_012506_010--Hb_009787_050 Hb_000836_550 Hb_000836_550 Hb_012506_010--Hb_000836_550 Hb_165402_010--Hb_181441_010 Hb_165402_010--Hb_106688_010 Hb_075764_010 Hb_075764_010 Hb_165402_010--Hb_075764_010 Hb_000230_180 Hb_000230_180 Hb_165402_010--Hb_000230_180 Hb_002611_020 Hb_002611_020 Hb_165402_010--Hb_002611_020 Hb_007441_090 Hb_007441_090 Hb_106688_010--Hb_007441_090 Hb_040747_010 Hb_040747_010 Hb_106688_010--Hb_040747_010 Hb_145317_010 Hb_145317_010 Hb_106688_010--Hb_145317_010 Hb_106688_010--Hb_009247_010 Hb_106415_010 Hb_106415_010 Hb_099878_050--Hb_106415_010 Hb_099878_050--Hb_075764_010 Hb_013358_090 Hb_013358_090 Hb_099878_050--Hb_013358_090 Hb_133724_010 Hb_133724_010 Hb_099878_050--Hb_133724_010 Hb_002687_080 Hb_002687_080 Hb_099878_050--Hb_002687_080 Hb_050912_010 Hb_050912_010 Hb_181441_010--Hb_050912_010 Hb_181328_010 Hb_181328_010 Hb_181441_010--Hb_181328_010 Hb_181441_010--Hb_009247_010 Hb_006541_040 Hb_006541_040 Hb_181441_010--Hb_006541_040 Hb_000098_050 Hb_000098_050 Hb_009247_010--Hb_000098_050 Hb_000116_150 Hb_000116_150 Hb_009247_010--Hb_000116_150 Hb_005062_110 Hb_005062_110 Hb_009247_010--Hb_005062_110 Hb_000890_030 Hb_000890_030 Hb_009247_010--Hb_000890_030 Hb_000818_100 Hb_000818_100 Hb_009247_010--Hb_000818_100 Hb_009222_070 Hb_009222_070 Hb_009247_010--Hb_009222_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.9407 78.931 55.5495 177.67 23.4574 136.317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.6443 23.8576 19.3684 88.0459 15.1345

CAGE analysis