Hb_181441_010

Information

Type -
Description -
Location Contig181441: 2388-3304
Sequence    

Annotation

kegg
ID rcu:RCOM_1118020
description Transmembrane protein, putative
nr
ID XP_012080635.1
description PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K3W5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13745 PE=4 SV=1
Gene Ontology
ID GO:0016021
description integral membrane family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17650: 3205-3311
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_181441_010 0.0 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
2 Hb_165402_010 0.116777971 - - PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]
3 Hb_050912_010 0.1227439208 - - PREDICTED: amidase 1-like isoform X2 [Jatropha curcas]
4 Hb_181328_010 0.13902618 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_009247_010 0.1472489861 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
6 Hb_077573_010 0.1478875491 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_006541_040 0.1511648851 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
8 Hb_002611_020 0.1527883159 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
9 Hb_000116_150 0.1531252472 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
10 Hb_013358_090 0.1543487754 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
11 Hb_005170_010 0.1550379843 - - -
12 Hb_099878_050 0.1550633845 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
13 Hb_134429_010 0.156716318 - - conserved hypothetical protein [Ricinus communis]
14 Hb_051257_010 0.1570273163 - - -
15 Hb_005686_120 0.1590484503 - - -
16 Hb_002027_180 0.1616605782 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
17 Hb_012506_010 0.1628139638 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
18 Hb_075764_010 0.1633173264 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
19 Hb_004228_100 0.1653733823 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
20 Hb_062558_010 0.1680868433 - - PREDICTED: L-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_181441_010 Hb_181441_010 Hb_165402_010 Hb_165402_010 Hb_181441_010--Hb_165402_010 Hb_050912_010 Hb_050912_010 Hb_181441_010--Hb_050912_010 Hb_181328_010 Hb_181328_010 Hb_181441_010--Hb_181328_010 Hb_009247_010 Hb_009247_010 Hb_181441_010--Hb_009247_010 Hb_077573_010 Hb_077573_010 Hb_181441_010--Hb_077573_010 Hb_006541_040 Hb_006541_040 Hb_181441_010--Hb_006541_040 Hb_106688_010 Hb_106688_010 Hb_165402_010--Hb_106688_010 Hb_075764_010 Hb_075764_010 Hb_165402_010--Hb_075764_010 Hb_000230_180 Hb_000230_180 Hb_165402_010--Hb_000230_180 Hb_165402_010--Hb_077573_010 Hb_002611_020 Hb_002611_020 Hb_165402_010--Hb_002611_020 Hb_050912_010--Hb_006541_040 Hb_134429_010 Hb_134429_010 Hb_050912_010--Hb_134429_010 Hb_002400_330 Hb_002400_330 Hb_050912_010--Hb_002400_330 Hb_005015_060 Hb_005015_060 Hb_050912_010--Hb_005015_060 Hb_161994_030 Hb_161994_030 Hb_050912_010--Hb_161994_030 Hb_000056_130 Hb_000056_130 Hb_050912_010--Hb_000056_130 Hb_181328_010--Hb_002611_020 Hb_013358_090 Hb_013358_090 Hb_181328_010--Hb_013358_090 Hb_181328_010--Hb_002400_330 Hb_106415_010 Hb_106415_010 Hb_181328_010--Hb_106415_010 Hb_086765_010 Hb_086765_010 Hb_181328_010--Hb_086765_010 Hb_181328_010--Hb_050912_010 Hb_000098_050 Hb_000098_050 Hb_009247_010--Hb_000098_050 Hb_000116_150 Hb_000116_150 Hb_009247_010--Hb_000116_150 Hb_005062_110 Hb_005062_110 Hb_009247_010--Hb_005062_110 Hb_000890_030 Hb_000890_030 Hb_009247_010--Hb_000890_030 Hb_000818_100 Hb_000818_100 Hb_009247_010--Hb_000818_100 Hb_009222_070 Hb_009222_070 Hb_009247_010--Hb_009222_070 Hb_012506_010 Hb_012506_010 Hb_077573_010--Hb_012506_010 Hb_077573_010--Hb_106688_010 Hb_099878_050 Hb_099878_050 Hb_077573_010--Hb_099878_050 Hb_077573_010--Hb_009247_010 Hb_001014_110 Hb_001014_110 Hb_006541_040--Hb_001014_110 Hb_054745_010 Hb_054745_010 Hb_006541_040--Hb_054745_010 Hb_004157_100 Hb_004157_100 Hb_006541_040--Hb_004157_100 Hb_000676_080 Hb_000676_080 Hb_006541_040--Hb_000676_080 Hb_006541_040--Hb_005015_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.16671 7.82518 7.51736 16.3825 2.98177 17.4519
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.39218 2.81929 1.74956 6.66469 5.74797

CAGE analysis