Hb_009222_070

Information

Type -
Description -
Location Contig9222: 114235-117992
Sequence    

Annotation

kegg
ID tcc:TCM_021957
description Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
nr
ID XP_012074915.1
description PREDICTED: xylosyltransferase 2 [Jatropha curcas]
swissprot
ID Q9EPI0
description Xylosyltransferase 2 OS=Rattus norvegicus GN=Xylt2 PE=2 SV=1
trembl
ID A0A067KHK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09055 PE=4 SV=1
Gene Ontology
ID GO:0016020
description xylosyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62527: 114237-117814 , PASA_asmbl_62529: 115881-116046
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009222_070 0.0 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
2 Hb_000805_210 0.08996441 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
3 Hb_009393_200 0.1049720898 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
4 Hb_083628_010 0.1058565334 - - PREDICTED: probable serine protease EDA2 [Jatropha curcas]
5 Hb_002615_070 0.1121801864 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
6 Hb_001623_110 0.1131943959 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
7 Hb_009247_010 0.1173115544 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
8 Hb_000503_020 0.1194352224 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
9 Hb_164945_010 0.1196088451 - - PREDICTED: DNA primase small subunit [Jatropha curcas]
10 Hb_007163_060 0.1202177726 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
11 Hb_007919_110 0.1215911943 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
12 Hb_000818_100 0.1220772754 - - PREDICTED: delta(24)-sterol reductase [Jatropha curcas]
13 Hb_073171_090 0.1234321376 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
14 Hb_002311_190 0.1271307486 - - PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]
15 Hb_006022_010 0.1277051385 - - PREDICTED: uncharacterized protein LOC105628883 [Jatropha curcas]
16 Hb_007800_020 0.1285441033 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
17 Hb_012760_030 0.1286927203 - - PREDICTED: probable prolyl 4-hydroxylase 10 [Gossypium raimondii]
18 Hb_005322_050 0.1291426374 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
19 Hb_003605_040 0.1299105238 - - PREDICTED: somatic embryogenesis receptor kinase 2 isoform X1 [Jatropha curcas]
20 Hb_004738_030 0.131532749 - - Inactive protein kinase [Gossypium arboreum]

Gene co-expression network

sample Hb_009222_070 Hb_009222_070 Hb_000805_210 Hb_000805_210 Hb_009222_070--Hb_000805_210 Hb_009393_200 Hb_009393_200 Hb_009222_070--Hb_009393_200 Hb_083628_010 Hb_083628_010 Hb_009222_070--Hb_083628_010 Hb_002615_070 Hb_002615_070 Hb_009222_070--Hb_002615_070 Hb_001623_110 Hb_001623_110 Hb_009222_070--Hb_001623_110 Hb_009247_010 Hb_009247_010 Hb_009222_070--Hb_009247_010 Hb_000805_210--Hb_002615_070 Hb_000890_030 Hb_000890_030 Hb_000805_210--Hb_000890_030 Hb_000805_210--Hb_001623_110 Hb_012760_030 Hb_012760_030 Hb_000805_210--Hb_012760_030 Hb_000958_080 Hb_000958_080 Hb_000805_210--Hb_000958_080 Hb_000805_210--Hb_083628_010 Hb_000122_010 Hb_000122_010 Hb_009393_200--Hb_000122_010 Hb_010053_040 Hb_010053_040 Hb_009393_200--Hb_010053_040 Hb_008511_060 Hb_008511_060 Hb_009393_200--Hb_008511_060 Hb_004374_130 Hb_004374_130 Hb_009393_200--Hb_004374_130 Hb_000637_140 Hb_000637_140 Hb_009393_200--Hb_000637_140 Hb_164945_010 Hb_164945_010 Hb_083628_010--Hb_164945_010 Hb_083628_010--Hb_001623_110 Hb_000836_300 Hb_000836_300 Hb_083628_010--Hb_000836_300 Hb_083628_010--Hb_012760_030 Hb_007919_110 Hb_007919_110 Hb_002615_070--Hb_007919_110 Hb_000703_160 Hb_000703_160 Hb_002615_070--Hb_000703_160 Hb_003449_100 Hb_003449_100 Hb_002615_070--Hb_003449_100 Hb_002615_070--Hb_000958_080 Hb_005535_080 Hb_005535_080 Hb_002615_070--Hb_005535_080 Hb_001623_110--Hb_012760_030 Hb_000300_550 Hb_000300_550 Hb_001623_110--Hb_000300_550 Hb_000580_030 Hb_000580_030 Hb_001623_110--Hb_000580_030 Hb_006022_010 Hb_006022_010 Hb_001623_110--Hb_006022_010 Hb_007800_020 Hb_007800_020 Hb_001623_110--Hb_007800_020 Hb_000098_050 Hb_000098_050 Hb_009247_010--Hb_000098_050 Hb_000116_150 Hb_000116_150 Hb_009247_010--Hb_000116_150 Hb_005062_110 Hb_005062_110 Hb_009247_010--Hb_005062_110 Hb_009247_010--Hb_000890_030 Hb_000818_100 Hb_000818_100 Hb_009247_010--Hb_000818_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7559 15.1218 24.331 34.0367 12.1242 11.7641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.77471 3.16951 4.80151 6.47911 7.71486

CAGE analysis