Hb_000836_300

Information

Type -
Description -
Location Contig836: 217830-227439
Sequence    

Annotation

kegg
ID rcu:RCOM_1616330
description caax prenyl protease ste24, putative (EC:3.4.24.84)
nr
ID XP_002511907.1
description caax prenyl protease ste24, putative [Ricinus communis]
swissprot
ID Q8RX88
description CAAX prenyl protease 1 homolog OS=Arabidopsis thaliana GN=FACE1 PE=1 SV=1
trembl
ID B9RDW8
description Caax prenyl protease ste24, putative OS=Ricinus communis GN=RCOM_1616330 PE=3 SV=1
Gene Ontology
ID GO:0005773
description caax prenyl protease 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59942: 217906-227405
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_300 0.0 - - caax prenyl protease ste24, putative [Ricinus communis]
2 Hb_004064_040 0.0766553374 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
3 Hb_005730_010 0.084136048 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
4 Hb_164945_010 0.0884709477 - - PREDICTED: DNA primase small subunit [Jatropha curcas]
5 Hb_005064_010 0.0893788428 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
6 Hb_000622_110 0.0900570719 - - cmp-sialic acid transporter, putative [Ricinus communis]
7 Hb_004228_120 0.0917379107 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
8 Hb_001677_200 0.0955171153 - - conserved hypothetical protein [Ricinus communis]
9 Hb_083628_010 0.0967487567 - - PREDICTED: probable serine protease EDA2 [Jatropha curcas]
10 Hb_000054_040 0.0974653995 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
11 Hb_161568_010 0.0985073381 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
12 Hb_004724_390 0.1013326908 - - PREDICTED: nicalin-1-like [Populus euphratica]
13 Hb_004096_160 0.1015439148 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
14 Hb_000497_190 0.1017641752 - - sterol isomerase, putative [Ricinus communis]
15 Hb_023313_040 0.1020044415 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
16 Hb_001250_050 0.1027633512 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
17 Hb_000958_080 0.1031753855 - - conserved hypothetical protein [Ricinus communis]
18 Hb_012180_010 0.1031929523 - - PREDICTED: (S)-ureidoglycine aminohydrolase [Jatropha curcas]
19 Hb_086639_080 0.1041668681 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000261_210 0.1058403348 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]

Gene co-expression network

sample Hb_000836_300 Hb_000836_300 Hb_004064_040 Hb_004064_040 Hb_000836_300--Hb_004064_040 Hb_005730_010 Hb_005730_010 Hb_000836_300--Hb_005730_010 Hb_164945_010 Hb_164945_010 Hb_000836_300--Hb_164945_010 Hb_005064_010 Hb_005064_010 Hb_000836_300--Hb_005064_010 Hb_000622_110 Hb_000622_110 Hb_000836_300--Hb_000622_110 Hb_004228_120 Hb_004228_120 Hb_000836_300--Hb_004228_120 Hb_004064_040--Hb_005064_010 Hb_000903_010 Hb_000903_010 Hb_004064_040--Hb_000903_010 Hb_000160_070 Hb_000160_070 Hb_004064_040--Hb_000160_070 Hb_000056_160 Hb_000056_160 Hb_004064_040--Hb_000056_160 Hb_001227_120 Hb_001227_120 Hb_004064_040--Hb_001227_120 Hb_023313_040 Hb_023313_040 Hb_005730_010--Hb_023313_040 Hb_025668_010 Hb_025668_010 Hb_005730_010--Hb_025668_010 Hb_000958_080 Hb_000958_080 Hb_005730_010--Hb_000958_080 Hb_004096_160 Hb_004096_160 Hb_005730_010--Hb_004096_160 Hb_000702_090 Hb_000702_090 Hb_005730_010--Hb_000702_090 Hb_007413_040 Hb_007413_040 Hb_005730_010--Hb_007413_040 Hb_164945_010--Hb_000958_080 Hb_000046_080 Hb_000046_080 Hb_164945_010--Hb_000046_080 Hb_007163_060 Hb_007163_060 Hb_164945_010--Hb_007163_060 Hb_005322_050 Hb_005322_050 Hb_164945_010--Hb_005322_050 Hb_083628_010 Hb_083628_010 Hb_164945_010--Hb_083628_010 Hb_000154_050 Hb_000154_050 Hb_005064_010--Hb_000154_050 Hb_001002_060 Hb_001002_060 Hb_005064_010--Hb_001002_060 Hb_005064_010--Hb_001227_120 Hb_003540_050 Hb_003540_050 Hb_005064_010--Hb_003540_050 Hb_005064_010--Hb_000160_070 Hb_000256_230 Hb_000256_230 Hb_000622_110--Hb_000256_230 Hb_005062_110 Hb_005062_110 Hb_000622_110--Hb_005062_110 Hb_002486_050 Hb_002486_050 Hb_000622_110--Hb_002486_050 Hb_000926_340 Hb_000926_340 Hb_000622_110--Hb_000926_340 Hb_003209_130 Hb_003209_130 Hb_000622_110--Hb_003209_130 Hb_086639_080 Hb_086639_080 Hb_000622_110--Hb_086639_080 Hb_001279_190 Hb_001279_190 Hb_004228_120--Hb_001279_190 Hb_002687_180 Hb_002687_180 Hb_004228_120--Hb_002687_180 Hb_002552_040 Hb_002552_040 Hb_004228_120--Hb_002552_040 Hb_159809_070 Hb_159809_070 Hb_004228_120--Hb_159809_070 Hb_004228_120--Hb_001227_120 Hb_011716_010 Hb_011716_010 Hb_004228_120--Hb_011716_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.8554 29.7612 59.0838 74.6694 31.7557 27.546
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9728 18.8502 13.1791 40.2669 20.3933

CAGE analysis