Hb_083628_010

Information

Type -
Description -
Location Contig83628: 155-1436
Sequence    

Annotation

kegg
ID rcu:RCOM_0291690
description catalytic, putative (EC:3.4.16.2)
nr
ID XP_012065346.1
description PREDICTED: probable serine protease EDA2 [Jatropha curcas]
swissprot
ID Q1PF50
description Probable serine protease EDA2 OS=Arabidopsis thaliana GN=EDA2 PE=2 SV=2
trembl
ID A0A067LDY9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06484 PE=4 SV=1
Gene Ontology
ID GO:0004180
description probable serine protease eda2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_083628_010 0.0 - - PREDICTED: probable serine protease EDA2 [Jatropha curcas]
2 Hb_000805_210 0.0885118132 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
3 Hb_164945_010 0.095562028 - - PREDICTED: DNA primase small subunit [Jatropha curcas]
4 Hb_001623_110 0.0961632785 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
5 Hb_000836_300 0.0967487567 - - caax prenyl protease ste24, putative [Ricinus communis]
6 Hb_012760_030 0.1007242924 - - PREDICTED: probable prolyl 4-hydroxylase 10 [Gossypium raimondii]
7 Hb_009222_070 0.1058565334 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
8 Hb_000784_080 0.112496734 - - protein disulfide isomerase, putative [Ricinus communis]
9 Hb_000622_340 0.1154671388 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 [Jatropha curcas]
10 Hb_000098_050 0.1184282957 - - BnaCnng11900D [Brassica napus]
11 Hb_002615_070 0.1195813789 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
12 Hb_000890_030 0.1205857092 - - plastid CUL1 [Hevea brasiliensis]
13 Hb_005322_050 0.1210316504 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
14 Hb_009247_010 0.1222011564 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
15 Hb_000958_080 0.1238550811 - - conserved hypothetical protein [Ricinus communis]
16 Hb_162060_010 0.1243688962 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007163_060 0.1249336841 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
18 Hb_000580_030 0.1257552449 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
19 Hb_000054_040 0.1273671236 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
20 Hb_005730_010 0.1274623867 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_083628_010 Hb_083628_010 Hb_000805_210 Hb_000805_210 Hb_083628_010--Hb_000805_210 Hb_164945_010 Hb_164945_010 Hb_083628_010--Hb_164945_010 Hb_001623_110 Hb_001623_110 Hb_083628_010--Hb_001623_110 Hb_000836_300 Hb_000836_300 Hb_083628_010--Hb_000836_300 Hb_012760_030 Hb_012760_030 Hb_083628_010--Hb_012760_030 Hb_009222_070 Hb_009222_070 Hb_083628_010--Hb_009222_070 Hb_002615_070 Hb_002615_070 Hb_000805_210--Hb_002615_070 Hb_000890_030 Hb_000890_030 Hb_000805_210--Hb_000890_030 Hb_000805_210--Hb_001623_110 Hb_000805_210--Hb_012760_030 Hb_000958_080 Hb_000958_080 Hb_000805_210--Hb_000958_080 Hb_164945_010--Hb_000836_300 Hb_164945_010--Hb_000958_080 Hb_000046_080 Hb_000046_080 Hb_164945_010--Hb_000046_080 Hb_007163_060 Hb_007163_060 Hb_164945_010--Hb_007163_060 Hb_005322_050 Hb_005322_050 Hb_164945_010--Hb_005322_050 Hb_001623_110--Hb_012760_030 Hb_000300_550 Hb_000300_550 Hb_001623_110--Hb_000300_550 Hb_000580_030 Hb_000580_030 Hb_001623_110--Hb_000580_030 Hb_006022_010 Hb_006022_010 Hb_001623_110--Hb_006022_010 Hb_007800_020 Hb_007800_020 Hb_001623_110--Hb_007800_020 Hb_004064_040 Hb_004064_040 Hb_000836_300--Hb_004064_040 Hb_005730_010 Hb_005730_010 Hb_000836_300--Hb_005730_010 Hb_005064_010 Hb_005064_010 Hb_000836_300--Hb_005064_010 Hb_000622_110 Hb_000622_110 Hb_000836_300--Hb_000622_110 Hb_004228_120 Hb_004228_120 Hb_000836_300--Hb_004228_120 Hb_000784_080 Hb_000784_080 Hb_012760_030--Hb_000784_080 Hb_012760_030--Hb_000890_030 Hb_000671_030 Hb_000671_030 Hb_012760_030--Hb_000671_030 Hb_007919_110 Hb_007919_110 Hb_012760_030--Hb_007919_110 Hb_004724_390 Hb_004724_390 Hb_012760_030--Hb_004724_390 Hb_009222_070--Hb_000805_210 Hb_009393_200 Hb_009393_200 Hb_009222_070--Hb_009393_200 Hb_009222_070--Hb_002615_070 Hb_009222_070--Hb_001623_110 Hb_009247_010 Hb_009247_010 Hb_009222_070--Hb_009247_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4583 29.7522 39.1272 64.3489 30.521 16.6357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.42654 10.0584 9.78747 21.1447 10.7648

CAGE analysis