Hb_000046_080

Information

Type -
Description -
Location Contig46: 73621-76454
Sequence    

Annotation

kegg
ID pmum:103322906
description serine/arginine-rich splicing factor 33
nr
ID XP_012069440.1
description PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KV64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02045 PE=4 SV=1
Gene Ontology
ID GO:0000786
description serine arginine-rich sc35-like splicing factor scl28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43606: 73688-81908 , PASA_asmbl_43607: 73720-78724
cDNA
(Sanger)
(ID:Location)		 030_C14.ab1: 73691-79805 , 050_D18.ab1: 73691-79740

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_080 0.0 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Jatropha curcas]
2 Hb_164945_010 0.0927563506 - - PREDICTED: DNA primase small subunit [Jatropha curcas]
3 Hb_007163_060 0.1031325117 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
4 Hb_004096_160 0.1087900401 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
5 Hb_172257_010 0.1135985107 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
6 Hb_000608_350 0.1148132922 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
7 Hb_162060_010 0.1157536037 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000637_140 0.1170277961 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
9 Hb_009449_060 0.1175221005 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
10 Hb_005322_050 0.1181947494 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
11 Hb_007413_040 0.1207723972 - - myo inositol monophosphatase, putative [Ricinus communis]
12 Hb_000958_080 0.1245518684 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000236_490 0.1249020749 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
14 Hb_000805_210 0.126276981 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
15 Hb_000836_300 0.1281318982 - - caax prenyl protease ste24, putative [Ricinus communis]
16 Hb_056987_010 0.1303259533 - - DNA-damage-repair/toleration protein DRT111, chloroplastic [Glycine soja]
17 Hb_000300_550 0.1305374569 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
18 Hb_000205_130 0.1309050973 - - calcium ion binding protein, putative [Ricinus communis]
19 Hb_002615_070 0.1323024101 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
20 Hb_073171_090 0.1342844335 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]

Gene co-expression network

sample Hb_000046_080 Hb_000046_080 Hb_164945_010 Hb_164945_010 Hb_000046_080--Hb_164945_010 Hb_007163_060 Hb_007163_060 Hb_000046_080--Hb_007163_060 Hb_004096_160 Hb_004096_160 Hb_000046_080--Hb_004096_160 Hb_172257_010 Hb_172257_010 Hb_000046_080--Hb_172257_010 Hb_000608_350 Hb_000608_350 Hb_000046_080--Hb_000608_350 Hb_162060_010 Hb_162060_010 Hb_000046_080--Hb_162060_010 Hb_000836_300 Hb_000836_300 Hb_164945_010--Hb_000836_300 Hb_000958_080 Hb_000958_080 Hb_164945_010--Hb_000958_080 Hb_164945_010--Hb_007163_060 Hb_005322_050 Hb_005322_050 Hb_164945_010--Hb_005322_050 Hb_083628_010 Hb_083628_010 Hb_164945_010--Hb_083628_010 Hb_007163_060--Hb_005322_050 Hb_007163_060--Hb_172257_010 Hb_004223_110 Hb_004223_110 Hb_007163_060--Hb_004223_110 Hb_003746_030 Hb_003746_030 Hb_007163_060--Hb_003746_030 Hb_000300_550 Hb_000300_550 Hb_007163_060--Hb_000300_550 Hb_009449_060 Hb_009449_060 Hb_007163_060--Hb_009449_060 Hb_004096_160--Hb_000958_080 Hb_002909_040 Hb_002909_040 Hb_004096_160--Hb_002909_040 Hb_004096_160--Hb_009449_060 Hb_000089_210 Hb_000089_210 Hb_004096_160--Hb_000089_210 Hb_161568_010 Hb_161568_010 Hb_004096_160--Hb_161568_010 Hb_000236_490 Hb_000236_490 Hb_004096_160--Hb_000236_490 Hb_172257_010--Hb_005322_050 Hb_172257_010--Hb_000300_550 Hb_152910_010 Hb_152910_010 Hb_172257_010--Hb_152910_010 Hb_172257_010--Hb_009449_060 Hb_000302_170 Hb_000302_170 Hb_172257_010--Hb_000302_170 Hb_007800_020 Hb_007800_020 Hb_000608_350--Hb_007800_020 Hb_000637_140 Hb_000637_140 Hb_000608_350--Hb_000637_140 Hb_000608_350--Hb_007163_060 Hb_000608_350--Hb_005322_050 Hb_000608_350--Hb_004223_110 Hb_005723_020 Hb_005723_020 Hb_000608_350--Hb_005723_020 Hb_000322_070 Hb_000322_070 Hb_162060_010--Hb_000322_070 Hb_146081_010 Hb_146081_010 Hb_162060_010--Hb_146081_010 Hb_000635_040 Hb_000635_040 Hb_162060_010--Hb_000635_040 Hb_000096_120 Hb_000096_120 Hb_162060_010--Hb_000096_120 Hb_008226_090 Hb_008226_090 Hb_162060_010--Hb_008226_090 Hb_000009_400 Hb_000009_400 Hb_162060_010--Hb_000009_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.97399 15.3959 23.4174 19.249 11.4626 15.5602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.79313 7.04911 3.47214 9.22917 4.38286

CAGE analysis