Hb_000122_010

Information

Type -
Description -
Location Contig122: 1814-8667
Sequence    

Annotation

kegg
ID rcu:RCOM_0688700
description amino acid transporter, putative
nr
ID XP_002520821.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q5RE87
description Sodium-coupled neutral amino acid transporter 4 OS=Pongo abelii GN=SLC38A4 PE=2 SV=1
trembl
ID B9S4A2
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0688700 PE=4 SV=1
Gene Ontology
ID GO:0016021
description sodium-coupled neutral amino acid transporter 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06651: 6464-6988
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000122_010 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_009393_200 0.1045901043 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
3 Hb_000186_330 0.1194476918 - - PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
4 Hb_007163_060 0.1199499357 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
5 Hb_008511_060 0.1277065327 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
6 Hb_010053_040 0.1290493561 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
7 Hb_005656_080 0.1293505246 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
8 Hb_003746_030 0.1309351173 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
9 Hb_000735_050 0.1339914411 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
10 Hb_000453_040 0.138819934 - - Triosephosphate isomerase, cytosolic [Gossypium arboreum]
11 Hb_073171_090 0.1388538279 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
12 Hb_004725_030 0.1448016546 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X4 [Jatropha curcas]
13 Hb_000438_090 0.1460576746 - - PREDICTED: mini-chromosome maintenance complex-binding protein [Jatropha curcas]
14 Hb_006831_070 0.1483195959 - - PREDICTED: probable galacturonosyltransferase 4 isoform X2 [Jatropha curcas]
15 Hb_000608_350 0.1492203478 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
16 Hb_000059_200 0.1494791987 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
17 Hb_004223_110 0.1502302082 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
18 Hb_000069_590 0.1513244471 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
19 Hb_000165_140 0.15139097 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X2 [Populus euphratica]
20 Hb_009222_070 0.1524147779 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000122_010 Hb_000122_010 Hb_009393_200 Hb_009393_200 Hb_000122_010--Hb_009393_200 Hb_000186_330 Hb_000186_330 Hb_000122_010--Hb_000186_330 Hb_007163_060 Hb_007163_060 Hb_000122_010--Hb_007163_060 Hb_008511_060 Hb_008511_060 Hb_000122_010--Hb_008511_060 Hb_010053_040 Hb_010053_040 Hb_000122_010--Hb_010053_040 Hb_005656_080 Hb_005656_080 Hb_000122_010--Hb_005656_080 Hb_009222_070 Hb_009222_070 Hb_009393_200--Hb_009222_070 Hb_009393_200--Hb_010053_040 Hb_009393_200--Hb_008511_060 Hb_004374_130 Hb_004374_130 Hb_009393_200--Hb_004374_130 Hb_000637_140 Hb_000637_140 Hb_009393_200--Hb_000637_140 Hb_003746_030 Hb_003746_030 Hb_000186_330--Hb_003746_030 Hb_000069_590 Hb_000069_590 Hb_000186_330--Hb_000069_590 Hb_000735_050 Hb_000735_050 Hb_000186_330--Hb_000735_050 Hb_002379_050 Hb_002379_050 Hb_000186_330--Hb_002379_050 Hb_014361_150 Hb_014361_150 Hb_000186_330--Hb_014361_150 Hb_003994_140 Hb_003994_140 Hb_000186_330--Hb_003994_140 Hb_005322_050 Hb_005322_050 Hb_007163_060--Hb_005322_050 Hb_172257_010 Hb_172257_010 Hb_007163_060--Hb_172257_010 Hb_004223_110 Hb_004223_110 Hb_007163_060--Hb_004223_110 Hb_007163_060--Hb_003746_030 Hb_000300_550 Hb_000300_550 Hb_007163_060--Hb_000300_550 Hb_009449_060 Hb_009449_060 Hb_007163_060--Hb_009449_060 Hb_006831_070 Hb_006831_070 Hb_008511_060--Hb_006831_070 Hb_002217_380 Hb_002217_380 Hb_008511_060--Hb_002217_380 Hb_086022_010 Hb_086022_010 Hb_008511_060--Hb_086022_010 Hb_008511_060--Hb_010053_040 Hb_000608_350 Hb_000608_350 Hb_008511_060--Hb_000608_350 Hb_002965_040 Hb_002965_040 Hb_010053_040--Hb_002965_040 Hb_010053_040--Hb_000735_050 Hb_005000_320 Hb_005000_320 Hb_010053_040--Hb_005000_320 Hb_010053_040--Hb_000637_140 Hb_003038_120 Hb_003038_120 Hb_010053_040--Hb_003038_120 Hb_003891_070 Hb_003891_070 Hb_010053_040--Hb_003891_070 Hb_003605_050 Hb_003605_050 Hb_005656_080--Hb_003605_050 Hb_005656_080--Hb_000186_330 Hb_004725_030 Hb_004725_030 Hb_005656_080--Hb_004725_030 Hb_000059_200 Hb_000059_200 Hb_005656_080--Hb_000059_200 Hb_000077_120 Hb_000077_120 Hb_005656_080--Hb_000077_120 Hb_000205_130 Hb_000205_130 Hb_005656_080--Hb_000205_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.54231 4.60811 8.89554 5.93519 3.91939 4.46398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.34789 1.20363 1.28509 1.29519 0.655524

CAGE analysis