Hb_004725_030

Information

Type -
Description -
Location Contig4725: 55297-56256
Sequence    

Annotation

kegg
ID rcu:RCOM_0455870
description lipid binding protein, putative
nr
ID XP_012065197.1
description PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X4 [Jatropha curcas]
swissprot
ID F4JSE7
description Protein ENHANCED DISEASE RESISTANCE 2 OS=Arabidopsis thaliana GN=EDR2 PE=2 SV=1
trembl
ID A0A067L9F8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20873 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44398: 55289-57065
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004725_030 0.0 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X4 [Jatropha curcas]
2 Hb_000139_220 0.0996520373 - - leucine rich repeat-containing protein, putative [Ricinus communis]
3 Hb_005656_080 0.10557396 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
4 Hb_000077_120 0.1063532485 - - PREDICTED: two pore calcium channel protein 1 [Jatropha curcas]
5 Hb_001621_110 0.1095445676 - - PREDICTED: uncharacterized protein LOC105647362 [Jatropha curcas]
6 Hb_013405_150 0.1139916126 - - PREDICTED: actin cytoskeleton-regulatory complex protein pan1 [Jatropha curcas]
7 Hb_026234_010 0.1146394863 - - choline monooxygenase, putative [Ricinus communis]
8 Hb_003605_050 0.1149802924 - - protein with unknown function [Ricinus communis]
9 Hb_006502_020 0.1152918932 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
10 Hb_002249_020 0.118501062 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
11 Hb_009449_060 0.1193828478 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
12 Hb_008387_010 0.1211725562 - - SMAD/FHA domain-containing protein isoform 3 [Theobroma cacao]
13 Hb_011249_030 0.1220965794 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
14 Hb_155025_010 0.1222997417 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
15 Hb_001005_020 0.1225318646 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
16 Hb_000890_010 0.1236885775 - - conserved hypothetical protein [Ricinus communis]
17 Hb_172257_010 0.1237874947 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
18 Hb_011609_010 0.1252958194 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
19 Hb_000009_220 0.1256515192 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
20 Hb_007163_060 0.1269693757 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]

Gene co-expression network

sample Hb_004725_030 Hb_004725_030 Hb_000139_220 Hb_000139_220 Hb_004725_030--Hb_000139_220 Hb_005656_080 Hb_005656_080 Hb_004725_030--Hb_005656_080 Hb_000077_120 Hb_000077_120 Hb_004725_030--Hb_000077_120 Hb_001621_110 Hb_001621_110 Hb_004725_030--Hb_001621_110 Hb_013405_150 Hb_013405_150 Hb_004725_030--Hb_013405_150 Hb_026234_010 Hb_026234_010 Hb_004725_030--Hb_026234_010 Hb_000139_220--Hb_000077_120 Hb_002291_060 Hb_002291_060 Hb_000139_220--Hb_002291_060 Hb_000940_050 Hb_000940_050 Hb_000139_220--Hb_000940_050 Hb_009449_060 Hb_009449_060 Hb_000139_220--Hb_009449_060 Hb_172257_010 Hb_172257_010 Hb_000139_220--Hb_172257_010 Hb_000589_190 Hb_000589_190 Hb_000139_220--Hb_000589_190 Hb_003605_050 Hb_003605_050 Hb_005656_080--Hb_003605_050 Hb_000186_330 Hb_000186_330 Hb_005656_080--Hb_000186_330 Hb_000059_200 Hb_000059_200 Hb_005656_080--Hb_000059_200 Hb_005656_080--Hb_000077_120 Hb_000205_130 Hb_000205_130 Hb_005656_080--Hb_000205_130 Hb_000077_120--Hb_002291_060 Hb_044155_010 Hb_044155_010 Hb_000077_120--Hb_044155_010 Hb_002890_150 Hb_002890_150 Hb_000077_120--Hb_002890_150 Hb_000077_120--Hb_013405_150 Hb_000890_010 Hb_000890_010 Hb_000077_120--Hb_000890_010 Hb_007777_010 Hb_007777_010 Hb_001621_110--Hb_007777_010 Hb_004267_060 Hb_004267_060 Hb_001621_110--Hb_004267_060 Hb_001621_110--Hb_000890_010 Hb_000086_430 Hb_000086_430 Hb_001621_110--Hb_000086_430 Hb_011609_010 Hb_011609_010 Hb_001621_110--Hb_011609_010 Hb_013405_150--Hb_000890_010 Hb_013405_150--Hb_044155_010 Hb_006132_040 Hb_006132_040 Hb_013405_150--Hb_006132_040 Hb_013405_150--Hb_000139_220 Hb_000343_150 Hb_000343_150 Hb_013405_150--Hb_000343_150 Hb_008387_010 Hb_008387_010 Hb_026234_010--Hb_008387_010 Hb_016448_010 Hb_016448_010 Hb_026234_010--Hb_016448_010 Hb_000098_240 Hb_000098_240 Hb_026234_010--Hb_000098_240 Hb_001519_040 Hb_001519_040 Hb_026234_010--Hb_001519_040 Hb_003506_030 Hb_003506_030 Hb_026234_010--Hb_003506_030 Hb_007413_040 Hb_007413_040 Hb_026234_010--Hb_007413_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7627 14.288 29.316 11.4202 7.98698 10.9741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.41332 3.94279 5.54337 4.32259 7.44284

CAGE analysis