Hb_013405_150

Information

Type -
Description -
Location Contig13405: 91550-92377
Sequence    

Annotation

kegg
ID cic:CICLE_v10005598mg
description hypothetical protein
nr
ID XP_012083239.1
description PREDICTED: actin cytoskeleton-regulatory complex protein pan1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LQT1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07976 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09675: 91435-92810
cDNA
(Sanger)
(ID:Location)		 001_L23.ab1: 91481-92300 , 007_C06.ab1: 91481-92240 , 022_E13.ab1: 91480-91921 , 023_M10.ab1: 91487-91606 , 023_N20.ab1: 91481-92141 , 033_J06.ab1: 91481-92281 , 037_K08.ab1: 91478-92231 , 044_A16.ab1: 91481-92260 , 048_O22.ab1: 91435-92247 , 050_N03.ab1: 91481-92245

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013405_150 0.0 - - PREDICTED: actin cytoskeleton-regulatory complex protein pan1 [Jatropha curcas]
2 Hb_000077_120 0.0791190652 - - PREDICTED: two pore calcium channel protein 1 [Jatropha curcas]
3 Hb_000890_010 0.0802205235 - - conserved hypothetical protein [Ricinus communis]
4 Hb_044155_010 0.0820836044 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
5 Hb_006132_040 0.1011237171 - - hypothetical protein JCGZ_14390 [Jatropha curcas]
6 Hb_000139_220 0.1074904674 - - leucine rich repeat-containing protein, putative [Ricinus communis]
7 Hb_000343_150 0.1091946258 - - PREDICTED: MAR-binding filament-like protein 1-1 [Jatropha curcas]
8 Hb_005610_080 0.1125395737 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004725_030 0.1139916126 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X4 [Jatropha curcas]
10 Hb_002890_150 0.1157188249 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
11 Hb_002291_060 0.1171208113 - - PREDICTED: splicing factor 3A subunit 3-like isoform X1 [Fragaria vesca subsp. vesca]
12 Hb_003605_050 0.1188022917 - - protein with unknown function [Ricinus communis]
13 Hb_006502_020 0.120653136 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
14 Hb_000139_190 0.1264814491 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X2 [Jatropha curcas]
15 Hb_000579_190 0.1269418225 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
16 Hb_000107_480 0.1292236569 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
17 Hb_004236_030 0.1292563748 - - unknown [Lotus japonicus]
18 Hb_008165_030 0.1302173352 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
19 Hb_010998_040 0.1309040362 transcription factor TF Family: MYB myb3r3, putative [Ricinus communis]
20 Hb_001558_060 0.1314940949 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_013405_150 Hb_013405_150 Hb_000077_120 Hb_000077_120 Hb_013405_150--Hb_000077_120 Hb_000890_010 Hb_000890_010 Hb_013405_150--Hb_000890_010 Hb_044155_010 Hb_044155_010 Hb_013405_150--Hb_044155_010 Hb_006132_040 Hb_006132_040 Hb_013405_150--Hb_006132_040 Hb_000139_220 Hb_000139_220 Hb_013405_150--Hb_000139_220 Hb_000343_150 Hb_000343_150 Hb_013405_150--Hb_000343_150 Hb_002291_060 Hb_002291_060 Hb_000077_120--Hb_002291_060 Hb_000077_120--Hb_044155_010 Hb_002890_150 Hb_002890_150 Hb_000077_120--Hb_002890_150 Hb_000077_120--Hb_000139_220 Hb_000077_120--Hb_000890_010 Hb_000890_010--Hb_006132_040 Hb_005610_080 Hb_005610_080 Hb_000890_010--Hb_005610_080 Hb_004236_030 Hb_004236_030 Hb_000890_010--Hb_004236_030 Hb_000890_010--Hb_044155_010 Hb_044155_010--Hb_002291_060 Hb_044155_010--Hb_006132_040 Hb_044155_010--Hb_000139_220 Hb_000098_140 Hb_000098_140 Hb_044155_010--Hb_000098_140 Hb_006132_040--Hb_005610_080 Hb_006132_040--Hb_004236_030 Hb_003992_180 Hb_003992_180 Hb_006132_040--Hb_003992_180 Hb_000227_310 Hb_000227_310 Hb_006132_040--Hb_000227_310 Hb_008165_030 Hb_008165_030 Hb_006132_040--Hb_008165_030 Hb_000139_220--Hb_002291_060 Hb_000940_050 Hb_000940_050 Hb_000139_220--Hb_000940_050 Hb_009449_060 Hb_009449_060 Hb_000139_220--Hb_009449_060 Hb_172257_010 Hb_172257_010 Hb_000139_220--Hb_172257_010 Hb_000589_190 Hb_000589_190 Hb_000139_220--Hb_000589_190 Hb_001558_060 Hb_001558_060 Hb_000343_150--Hb_001558_060 Hb_000343_150--Hb_008165_030 Hb_004236_010 Hb_004236_010 Hb_000343_150--Hb_004236_010 Hb_000723_110 Hb_000723_110 Hb_000343_150--Hb_000723_110 Hb_003605_050 Hb_003605_050 Hb_000343_150--Hb_003605_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
425.388 845.707 1286.38 303.331 600.956 352.316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
188.96 165.827 249.452 195.818 306.314

CAGE analysis