Hb_004236_030

Information

Type -
Description -
Location Contig4236: 31778-36876
Sequence    

Annotation

kegg
ID pop:POPTR_0004s117901
description mitochondrial processing peptidase beta subunit family protein
nr
ID AFK45884.1
description unknown [Lotus japonicus]
swissprot
ID -
description -
trembl
ID I3T042
description Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID GO:0004222
description insulinase (peptidase family m16) protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41880: 24096-37480
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004236_030 0.0 - - unknown [Lotus japonicus]
2 Hb_006132_040 0.0805659548 - - hypothetical protein JCGZ_14390 [Jatropha curcas]
3 Hb_000579_190 0.0856427324 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
4 Hb_001558_060 0.0955195639 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Jatropha curcas]
5 Hb_000890_010 0.1008969675 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000375_290 0.1033135201 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
7 Hb_002107_060 0.104144692 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
8 Hb_003777_110 0.1067316826 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 8 [Jatropha curcas]
9 Hb_000291_030 0.1166758058 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Eucalyptus grandis]
10 Hb_005610_080 0.1171610557 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003992_180 0.1175068731 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
12 Hb_008695_090 0.1188620132 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
13 Hb_008165_030 0.1195702229 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
14 Hb_000086_430 0.1204439871 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
15 Hb_010368_080 0.1213035129 - - PREDICTED: uncharacterized protein LOC105630287 [Jatropha curcas]
16 Hb_001245_050 0.1249654098 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
17 Hb_000723_110 0.1255429907 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
18 Hb_021530_010 0.1261168562 - - PREDICTED: la protein 1 [Jatropha curcas]
19 Hb_006538_130 0.1268397347 - - Uncharacterized protein TCM_009867 [Theobroma cacao]
20 Hb_001621_110 0.127152891 - - PREDICTED: uncharacterized protein LOC105647362 [Jatropha curcas]

Gene co-expression network

sample Hb_004236_030 Hb_004236_030 Hb_006132_040 Hb_006132_040 Hb_004236_030--Hb_006132_040 Hb_000579_190 Hb_000579_190 Hb_004236_030--Hb_000579_190 Hb_001558_060 Hb_001558_060 Hb_004236_030--Hb_001558_060 Hb_000890_010 Hb_000890_010 Hb_004236_030--Hb_000890_010 Hb_000375_290 Hb_000375_290 Hb_004236_030--Hb_000375_290 Hb_002107_060 Hb_002107_060 Hb_004236_030--Hb_002107_060 Hb_005610_080 Hb_005610_080 Hb_006132_040--Hb_005610_080 Hb_006132_040--Hb_000890_010 Hb_003992_180 Hb_003992_180 Hb_006132_040--Hb_003992_180 Hb_000227_310 Hb_000227_310 Hb_006132_040--Hb_000227_310 Hb_008165_030 Hb_008165_030 Hb_006132_040--Hb_008165_030 Hb_001005_020 Hb_001005_020 Hb_000579_190--Hb_001005_020 Hb_000579_190--Hb_000375_290 Hb_000579_190--Hb_001558_060 Hb_004943_030 Hb_004943_030 Hb_000579_190--Hb_004943_030 Hb_008695_090 Hb_008695_090 Hb_000579_190--Hb_008695_090 Hb_023226_070 Hb_023226_070 Hb_001558_060--Hb_023226_070 Hb_001558_060--Hb_000375_290 Hb_001558_060--Hb_008165_030 Hb_001558_060--Hb_003992_180 Hb_002811_040 Hb_002811_040 Hb_001558_060--Hb_002811_040 Hb_013405_150 Hb_013405_150 Hb_000890_010--Hb_013405_150 Hb_000890_010--Hb_005610_080 Hb_000077_120 Hb_000077_120 Hb_000890_010--Hb_000077_120 Hb_044155_010 Hb_044155_010 Hb_000890_010--Hb_044155_010 Hb_001225_030 Hb_001225_030 Hb_000375_290--Hb_001225_030 Hb_004870_050 Hb_004870_050 Hb_000375_290--Hb_004870_050 Hb_000048_080 Hb_000048_080 Hb_000375_290--Hb_000048_080 Hb_000375_290--Hb_023226_070 Hb_002897_050 Hb_002897_050 Hb_002107_060--Hb_002897_050 Hb_011631_010 Hb_011631_010 Hb_002107_060--Hb_011631_010 Hb_000084_240 Hb_000084_240 Hb_002107_060--Hb_000084_240 Hb_000045_260 Hb_000045_260 Hb_002107_060--Hb_000045_260 Hb_000638_280 Hb_000638_280 Hb_002107_060--Hb_000638_280 Hb_002107_060--Hb_000375_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.59856 11.5404 11.5304 2.72817 3.1912 3.44488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.68554 2.88765 2.32944 3.09533 2.39514

CAGE analysis