Hb_000045_260

Information

Type -
Description -
Location Contig45: 264559-265482
Sequence    

Annotation

kegg
ID rcu:RCOM_0591430
description protein with unknown function
nr
ID XP_002526856.1
description protein with unknown function [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SLI7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0591430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43145: 266035-266415
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000045_260 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_011631_010 0.070966677 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
3 Hb_000638_280 0.077845393 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
4 Hb_000454_140 0.0804831973 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
5 Hb_002897_050 0.0825806173 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
6 Hb_000084_240 0.0864362699 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
7 Hb_000163_230 0.088871836 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
8 Hb_003581_280 0.090263171 - - KINASE 2B family protein [Populus trichocarpa]
9 Hb_005499_010 0.0933125737 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
10 Hb_000186_200 0.0970323982 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
11 Hb_004108_240 0.0971381035 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
12 Hb_000421_230 0.0977747675 - - retinal degeneration B beta, putative [Ricinus communis]
13 Hb_001009_090 0.0981640079 - - CDK protein [Hevea brasiliensis]
14 Hb_002107_060 0.0995726078 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
15 Hb_003777_110 0.1045289642 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 8 [Jatropha curcas]
16 Hb_090782_010 0.1057934899 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
17 Hb_091226_010 0.1078683717 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
18 Hb_003001_070 0.1089085446 transcription factor TF Family: ERF hypothetical protein POPTR_0002s24750g [Populus trichocarpa]
19 Hb_000699_210 0.1091290081 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
20 Hb_124677_040 0.1102853994 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]

Gene co-expression network

sample Hb_000045_260 Hb_000045_260 Hb_011631_010 Hb_011631_010 Hb_000045_260--Hb_011631_010 Hb_000638_280 Hb_000638_280 Hb_000045_260--Hb_000638_280 Hb_000454_140 Hb_000454_140 Hb_000045_260--Hb_000454_140 Hb_002897_050 Hb_002897_050 Hb_000045_260--Hb_002897_050 Hb_000084_240 Hb_000084_240 Hb_000045_260--Hb_000084_240 Hb_000163_230 Hb_000163_230 Hb_000045_260--Hb_000163_230 Hb_011631_010--Hb_002897_050 Hb_005499_010 Hb_005499_010 Hb_011631_010--Hb_005499_010 Hb_002107_060 Hb_002107_060 Hb_011631_010--Hb_002107_060 Hb_011631_010--Hb_000638_280 Hb_011631_010--Hb_000084_240 Hb_000638_280--Hb_002897_050 Hb_000156_090 Hb_000156_090 Hb_000638_280--Hb_000156_090 Hb_000699_210 Hb_000699_210 Hb_000638_280--Hb_000699_210 Hb_000796_120 Hb_000796_120 Hb_000638_280--Hb_000796_120 Hb_000454_140--Hb_000163_230 Hb_007849_050 Hb_007849_050 Hb_000454_140--Hb_007849_050 Hb_012305_140 Hb_012305_140 Hb_000454_140--Hb_012305_140 Hb_005694_130 Hb_005694_130 Hb_000454_140--Hb_005694_130 Hb_000454_140--Hb_005499_010 Hb_000866_210 Hb_000866_210 Hb_002897_050--Hb_000866_210 Hb_002897_050--Hb_002107_060 Hb_002897_050--Hb_000084_240 Hb_000084_240--Hb_005499_010 Hb_000186_200 Hb_000186_200 Hb_000084_240--Hb_000186_200 Hb_000084_240--Hb_002107_060 Hb_001009_090 Hb_001009_090 Hb_000163_230--Hb_001009_090 Hb_003078_030 Hb_003078_030 Hb_000163_230--Hb_003078_030 Hb_000671_060 Hb_000671_060 Hb_000163_230--Hb_000671_060 Hb_000163_230--Hb_000186_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.8044 213.847 145.724 69.9346 35.4838 26.2158
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.506 37.2851 37.8723 36.5594 47.98

CAGE analysis