Hb_005694_130

Information

Type -
Description -
Location Contig5694: 87061-92725
Sequence    

Annotation

kegg
ID rcu:RCOM_0715740
description Spotted leaf protein, putative
nr
ID XP_012083144.1
description PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
swissprot
ID Q9LM76
description U-box domain-containing protein 44 OS=Arabidopsis thaliana GN=PUB44 PE=1 SV=1
trembl
ID B9SBC6
description Spotted leaf protein, putative OS=Ricinus communis GN=RCOM_0715740 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 44-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49246: 89701-91396 , PASA_asmbl_49249: 93361-93507 , PASA_asmbl_49250: 92562-93455
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005694_130 0.0 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
2 Hb_003001_070 0.0621655192 transcription factor TF Family: ERF hypothetical protein POPTR_0002s24750g [Populus trichocarpa]
3 Hb_000609_110 0.0669902565 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
4 Hb_012305_140 0.0749348492 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
5 Hb_003992_180 0.0828494875 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
6 Hb_000454_140 0.0879850025 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
7 Hb_000805_200 0.0896518336 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
8 Hb_000836_540 0.0938814069 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
9 Hb_027380_210 0.0991927224 - - PREDICTED: uncharacterized protein LOC105634030 [Jatropha curcas]
10 Hb_007849_050 0.0993580183 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
11 Hb_006615_030 0.107044125 - - prolyl oligopeptidase family protein [Populus trichocarpa]
12 Hb_001369_030 0.1108739499 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
13 Hb_002056_100 0.1160123355 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
14 Hb_001009_120 0.1194077473 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
15 Hb_000212_300 0.1197457476 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
16 Hb_005941_020 0.1212196393 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
17 Hb_006502_020 0.1214360672 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
18 Hb_000671_060 0.1244013813 - - protein binding protein, putative [Ricinus communis]
19 Hb_010368_080 0.1266476177 - - PREDICTED: uncharacterized protein LOC105630287 [Jatropha curcas]
20 Hb_000163_230 0.1272875873 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005694_130 Hb_005694_130 Hb_003001_070 Hb_003001_070 Hb_005694_130--Hb_003001_070 Hb_000609_110 Hb_000609_110 Hb_005694_130--Hb_000609_110 Hb_012305_140 Hb_012305_140 Hb_005694_130--Hb_012305_140 Hb_003992_180 Hb_003992_180 Hb_005694_130--Hb_003992_180 Hb_000454_140 Hb_000454_140 Hb_005694_130--Hb_000454_140 Hb_000805_200 Hb_000805_200 Hb_005694_130--Hb_000805_200 Hb_007849_050 Hb_007849_050 Hb_003001_070--Hb_007849_050 Hb_003001_070--Hb_000454_140 Hb_003001_070--Hb_000609_110 Hb_003001_070--Hb_012305_140 Hb_003001_070--Hb_003992_180 Hb_027380_210 Hb_027380_210 Hb_000609_110--Hb_027380_210 Hb_000836_540 Hb_000836_540 Hb_000609_110--Hb_000836_540 Hb_000609_110--Hb_003992_180 Hb_000609_110--Hb_000805_200 Hb_012305_140--Hb_003992_180 Hb_012305_140--Hb_000454_140 Hb_010368_080 Hb_010368_080 Hb_012305_140--Hb_010368_080 Hb_012305_140--Hb_007849_050 Hb_002609_190 Hb_002609_190 Hb_012305_140--Hb_002609_190 Hb_030545_030 Hb_030545_030 Hb_003992_180--Hb_030545_030 Hb_006615_030 Hb_006615_030 Hb_003992_180--Hb_006615_030 Hb_004526_010 Hb_004526_010 Hb_003992_180--Hb_004526_010 Hb_001558_060 Hb_001558_060 Hb_003992_180--Hb_001558_060 Hb_000163_230 Hb_000163_230 Hb_000454_140--Hb_000163_230 Hb_000454_140--Hb_007849_050 Hb_000045_260 Hb_000045_260 Hb_000454_140--Hb_000045_260 Hb_005499_010 Hb_005499_010 Hb_000454_140--Hb_005499_010 Hb_000805_200--Hb_000836_540 Hb_000805_200--Hb_027380_210 Hb_000805_200--Hb_003001_070 Hb_001571_030 Hb_001571_030 Hb_000805_200--Hb_001571_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.31546 13.9122 12.2676 3.53665 3.62643 3.40508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.87516 1.54393 1.85122 2.31091 6.16009

CAGE analysis