Hb_005499_010

Information

Type transcription factor
Description TF Family: TRAF
Location Contig5499: 7251-13134
Sequence    

Annotation

kegg
ID rcu:RCOM_1160850
description Regulatory protein NPR1, putative
nr
ID XP_002520549.1
description Regulatory protein NPR1, putative [Ricinus communis]
swissprot
ID Q8L746
description Regulatory protein NPR3 OS=Arabidopsis thaliana GN=NPR3 PE=1 SV=1
trembl
ID B9S3I0
description Regulatory protein NPR1, putative OS=Ricinus communis GN=RCOM_1160850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48238: 7435-13217 , PASA_asmbl_48239: 7628-11454
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005499_010 0.0 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
2 Hb_000084_240 0.0710173887 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
3 Hb_011631_010 0.0814803477 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
4 Hb_091226_010 0.0898794173 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
5 Hb_000454_140 0.0910433017 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
6 Hb_000045_260 0.0933125737 - - protein with unknown function [Ricinus communis]
7 Hb_002897_050 0.1060877423 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
8 Hb_002107_060 0.107407674 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
9 Hb_003001_070 0.1156472353 transcription factor TF Family: ERF hypothetical protein POPTR_0002s24750g [Populus trichocarpa]
10 Hb_007849_050 0.1190932167 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
11 Hb_000069_730 0.1224105083 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X1 [Jatropha curcas]
12 Hb_000163_230 0.1240821579 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
13 Hb_000186_200 0.125342744 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
14 Hb_003224_030 0.1254915291 - - hypothetical protein POPTR_0077s002402g, partial [Populus trichocarpa]
15 Hb_090782_010 0.1314839437 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
16 Hb_002701_210 0.1317122673 - - Protein COBRA precursor, putative [Ricinus communis]
17 Hb_001009_090 0.1320016159 - - CDK protein [Hevea brasiliensis]
18 Hb_003120_050 0.1335693778 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
19 Hb_000866_210 0.1367022451 transcription factor TF Family: BES1 PREDICTED: beta-amylase 7 isoform X1 [Jatropha curcas]
20 Hb_004236_030 0.1367103292 - - unknown [Lotus japonicus]

Gene co-expression network

sample Hb_005499_010 Hb_005499_010 Hb_000084_240 Hb_000084_240 Hb_005499_010--Hb_000084_240 Hb_011631_010 Hb_011631_010 Hb_005499_010--Hb_011631_010 Hb_091226_010 Hb_091226_010 Hb_005499_010--Hb_091226_010 Hb_000454_140 Hb_000454_140 Hb_005499_010--Hb_000454_140 Hb_000045_260 Hb_000045_260 Hb_005499_010--Hb_000045_260 Hb_002897_050 Hb_002897_050 Hb_005499_010--Hb_002897_050 Hb_000186_200 Hb_000186_200 Hb_000084_240--Hb_000186_200 Hb_000084_240--Hb_002897_050 Hb_000084_240--Hb_000045_260 Hb_002107_060 Hb_002107_060 Hb_000084_240--Hb_002107_060 Hb_000084_240--Hb_011631_010 Hb_011631_010--Hb_000045_260 Hb_011631_010--Hb_002897_050 Hb_011631_010--Hb_002107_060 Hb_000638_280 Hb_000638_280 Hb_011631_010--Hb_000638_280 Hb_091226_010--Hb_000084_240 Hb_000163_230 Hb_000163_230 Hb_091226_010--Hb_000163_230 Hb_091226_010--Hb_000045_260 Hb_091226_010--Hb_000454_140 Hb_003078_030 Hb_003078_030 Hb_091226_010--Hb_003078_030 Hb_000454_140--Hb_000163_230 Hb_007849_050 Hb_007849_050 Hb_000454_140--Hb_007849_050 Hb_000454_140--Hb_000045_260 Hb_012305_140 Hb_012305_140 Hb_000454_140--Hb_012305_140 Hb_005694_130 Hb_005694_130 Hb_000454_140--Hb_005694_130 Hb_000045_260--Hb_000638_280 Hb_000045_260--Hb_002897_050 Hb_000045_260--Hb_000163_230 Hb_000866_210 Hb_000866_210 Hb_002897_050--Hb_000866_210 Hb_002897_050--Hb_000638_280 Hb_002897_050--Hb_002107_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.5964 182.262 102.354 31.0534 30.0422 19.3085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.1541 19.973 33.2268 24.8258 28.4385

CAGE analysis