Hb_000638_280

Information

Type -
Description -
Location Contig638: 225974-231056
Sequence    

Annotation

kegg
ID rcu:RCOM_0627690
description mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative (EC:1.3.1.74)
nr
ID XP_012066579.1
description PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
swissprot
ID Q9CAD5
description Mitogen-activated protein kinase kinase kinase YODA OS=Arabidopsis thaliana GN=YDA PE=1 SV=1
trembl
ID A0A067L2C5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24361 PE=4 SV=1
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase kinase yoda-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52048: 226098-231105
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000638_280 0.0 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
2 Hb_000045_260 0.077845393 - - protein with unknown function [Ricinus communis]
3 Hb_002897_050 0.0785846963 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
4 Hb_000156_090 0.0803530211 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
5 Hb_000699_210 0.0837712696 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
6 Hb_011631_010 0.0913263785 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
7 Hb_000796_120 0.0941223495 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
8 Hb_000048_080 0.0981868797 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
9 Hb_001376_010 0.0994517478 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
10 Hb_006452_180 0.0995067294 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
11 Hb_002965_050 0.0998736584 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
12 Hb_004526_010 0.1017987104 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
13 Hb_002107_060 0.1020460323 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
14 Hb_000086_430 0.1020650786 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
15 Hb_003777_110 0.1036949388 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 8 [Jatropha curcas]
16 Hb_010287_020 0.1038848126 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
17 Hb_001009_120 0.1039742374 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
18 Hb_004319_050 0.1052858811 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
19 Hb_000454_140 0.107245182 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
20 Hb_033152_090 0.1075382648 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]

Gene co-expression network

sample Hb_000638_280 Hb_000638_280 Hb_000045_260 Hb_000045_260 Hb_000638_280--Hb_000045_260 Hb_002897_050 Hb_002897_050 Hb_000638_280--Hb_002897_050 Hb_000156_090 Hb_000156_090 Hb_000638_280--Hb_000156_090 Hb_000699_210 Hb_000699_210 Hb_000638_280--Hb_000699_210 Hb_011631_010 Hb_011631_010 Hb_000638_280--Hb_011631_010 Hb_000796_120 Hb_000796_120 Hb_000638_280--Hb_000796_120 Hb_000045_260--Hb_011631_010 Hb_000454_140 Hb_000454_140 Hb_000045_260--Hb_000454_140 Hb_000045_260--Hb_002897_050 Hb_000084_240 Hb_000084_240 Hb_000045_260--Hb_000084_240 Hb_000163_230 Hb_000163_230 Hb_000045_260--Hb_000163_230 Hb_000866_210 Hb_000866_210 Hb_002897_050--Hb_000866_210 Hb_002897_050--Hb_011631_010 Hb_002107_060 Hb_002107_060 Hb_002897_050--Hb_002107_060 Hb_002897_050--Hb_000084_240 Hb_002965_050 Hb_002965_050 Hb_000156_090--Hb_002965_050 Hb_003018_030 Hb_003018_030 Hb_000156_090--Hb_003018_030 Hb_002900_120 Hb_002900_120 Hb_000156_090--Hb_002900_120 Hb_003428_090 Hb_003428_090 Hb_000156_090--Hb_003428_090 Hb_008725_050 Hb_008725_050 Hb_000156_090--Hb_008725_050 Hb_001488_040 Hb_001488_040 Hb_000699_210--Hb_001488_040 Hb_009486_160 Hb_009486_160 Hb_000699_210--Hb_009486_160 Hb_002387_040 Hb_002387_040 Hb_000699_210--Hb_002387_040 Hb_000699_210--Hb_002897_050 Hb_000699_210--Hb_000796_120 Hb_005499_010 Hb_005499_010 Hb_011631_010--Hb_005499_010 Hb_011631_010--Hb_002107_060 Hb_011631_010--Hb_000084_240 Hb_004319_050 Hb_004319_050 Hb_000796_120--Hb_004319_050 Hb_004526_010 Hb_004526_010 Hb_000796_120--Hb_004526_010 Hb_002107_100 Hb_002107_100 Hb_000796_120--Hb_002107_100 Hb_000418_050 Hb_000418_050 Hb_000796_120--Hb_000418_050 Hb_000261_280 Hb_000261_280 Hb_000796_120--Hb_000261_280 Hb_009178_010 Hb_009178_010 Hb_000796_120--Hb_009178_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7297 67.8394 52.4889 25.8274 8.87458 14.2231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2777 16.8013 14.0631 19.5425 20.0619

CAGE analysis