Hb_011631_010

Information

Type -
Description -
Location Contig11631: 28784-33714
Sequence    

Annotation

kegg
ID rcu:RCOM_0846800
description Urease accessory protein ureH, putative
nr
ID XP_012081792.1
description PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
swissprot
ID Q07404
description Urease accessory protein UreH OS=Bacillus sp. (strain TB-90) GN=ureH PE=3 SV=1
trembl
ID A0A067K3P2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18830 PE=4 SV=1
Gene Ontology
ID GO:0016021
description urease accessory protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05034: 29038-33594
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011631_010 0.0 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
2 Hb_000045_260 0.070966677 - - protein with unknown function [Ricinus communis]
3 Hb_002897_050 0.0777470804 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
4 Hb_005499_010 0.0814803477 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
5 Hb_002107_060 0.0818893712 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
6 Hb_000638_280 0.0913263785 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
7 Hb_000084_240 0.095510585 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
8 Hb_000866_210 0.100390458 transcription factor TF Family: BES1 PREDICTED: beta-amylase 7 isoform X1 [Jatropha curcas]
9 Hb_003777_110 0.1018257721 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 8 [Jatropha curcas]
10 Hb_000454_140 0.1061541517 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
11 Hb_004108_240 0.1078523802 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
12 Hb_006538_130 0.1097742528 - - Uncharacterized protein TCM_009867 [Theobroma cacao]
13 Hb_003001_070 0.1104989231 transcription factor TF Family: ERF hypothetical protein POPTR_0002s24750g [Populus trichocarpa]
14 Hb_000699_210 0.1137244504 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
15 Hb_000375_290 0.1192848459 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
16 Hb_003925_040 0.122045788 transcription factor TF Family: C2H2 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Jatropha curcas]
17 Hb_009486_160 0.1227906212 - - PREDICTED: metacaspase-1 [Jatropha curcas]
18 Hb_007849_050 0.124871149 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
19 Hb_052764_030 0.1258769869 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
20 Hb_000186_200 0.1312377185 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]

Gene co-expression network

sample Hb_011631_010 Hb_011631_010 Hb_000045_260 Hb_000045_260 Hb_011631_010--Hb_000045_260 Hb_002897_050 Hb_002897_050 Hb_011631_010--Hb_002897_050 Hb_005499_010 Hb_005499_010 Hb_011631_010--Hb_005499_010 Hb_002107_060 Hb_002107_060 Hb_011631_010--Hb_002107_060 Hb_000638_280 Hb_000638_280 Hb_011631_010--Hb_000638_280 Hb_000084_240 Hb_000084_240 Hb_011631_010--Hb_000084_240 Hb_000045_260--Hb_000638_280 Hb_000454_140 Hb_000454_140 Hb_000045_260--Hb_000454_140 Hb_000045_260--Hb_002897_050 Hb_000045_260--Hb_000084_240 Hb_000163_230 Hb_000163_230 Hb_000045_260--Hb_000163_230 Hb_000866_210 Hb_000866_210 Hb_002897_050--Hb_000866_210 Hb_002897_050--Hb_000638_280 Hb_002897_050--Hb_002107_060 Hb_002897_050--Hb_000084_240 Hb_005499_010--Hb_000084_240 Hb_091226_010 Hb_091226_010 Hb_005499_010--Hb_091226_010 Hb_005499_010--Hb_000454_140 Hb_005499_010--Hb_000045_260 Hb_005499_010--Hb_002897_050 Hb_002107_060--Hb_000084_240 Hb_002107_060--Hb_000045_260 Hb_002107_060--Hb_000638_280 Hb_000375_290 Hb_000375_290 Hb_002107_060--Hb_000375_290 Hb_000156_090 Hb_000156_090 Hb_000638_280--Hb_000156_090 Hb_000699_210 Hb_000699_210 Hb_000638_280--Hb_000699_210 Hb_000796_120 Hb_000796_120 Hb_000638_280--Hb_000796_120 Hb_000186_200 Hb_000186_200 Hb_000084_240--Hb_000186_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3788 49.0666 30.7387 11.6677 8.55239 5.54677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.55616 10.9751 10.8454 8.92877 12.6863

CAGE analysis