Hb_000084_240

Information

Type -
Description -
Location Contig84: 207019-210722
Sequence    

Annotation

kegg
ID rcu:RCOM_0292790
description transcription regulation, putative
nr
ID XP_012072972.1
description PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
swissprot
ID Q9FVS1
description F-box/kelch-repeat protein At1g57790 OS=Arabidopsis thaliana GN=At1g57790 PE=2 SV=1
trembl
ID A0A067KYH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06759 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60044: 207061-210546 , PASA_asmbl_60045: 207061-209822
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000084_240 0.0 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
2 Hb_005499_010 0.0710173887 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
3 Hb_000186_200 0.0756619752 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
4 Hb_002897_050 0.0825089701 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
5 Hb_000045_260 0.0864362699 - - protein with unknown function [Ricinus communis]
6 Hb_002107_060 0.0919627181 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
7 Hb_011631_010 0.095510585 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
8 Hb_000454_140 0.0986564643 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
9 Hb_091226_010 0.100934511 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
10 Hb_003078_030 0.1029541223 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
11 Hb_002701_210 0.1033939111 - - Protein COBRA precursor, putative [Ricinus communis]
12 Hb_000069_730 0.1051491011 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X1 [Jatropha curcas]
13 Hb_003224_030 0.105260447 - - hypothetical protein POPTR_0077s002402g, partial [Populus trichocarpa]
14 Hb_000163_230 0.1087596813 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
15 Hb_001009_090 0.1090650493 - - CDK protein [Hevea brasiliensis]
16 Hb_007007_080 0.1154420059 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000638_280 0.1167506527 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
18 Hb_002685_200 0.1264339303 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
19 Hb_090782_010 0.1267809416 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
20 Hb_004108_240 0.1294494879 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]

Gene co-expression network

sample Hb_000084_240 Hb_000084_240 Hb_005499_010 Hb_005499_010 Hb_000084_240--Hb_005499_010 Hb_000186_200 Hb_000186_200 Hb_000084_240--Hb_000186_200 Hb_002897_050 Hb_002897_050 Hb_000084_240--Hb_002897_050 Hb_000045_260 Hb_000045_260 Hb_000084_240--Hb_000045_260 Hb_002107_060 Hb_002107_060 Hb_000084_240--Hb_002107_060 Hb_011631_010 Hb_011631_010 Hb_000084_240--Hb_011631_010 Hb_005499_010--Hb_011631_010 Hb_091226_010 Hb_091226_010 Hb_005499_010--Hb_091226_010 Hb_000454_140 Hb_000454_140 Hb_005499_010--Hb_000454_140 Hb_005499_010--Hb_000045_260 Hb_005499_010--Hb_002897_050 Hb_002701_210 Hb_002701_210 Hb_000186_200--Hb_002701_210 Hb_003078_030 Hb_003078_030 Hb_000186_200--Hb_003078_030 Hb_001009_090 Hb_001009_090 Hb_000186_200--Hb_001009_090 Hb_000186_200--Hb_000045_260 Hb_000163_230 Hb_000163_230 Hb_000186_200--Hb_000163_230 Hb_000866_210 Hb_000866_210 Hb_002897_050--Hb_000866_210 Hb_002897_050--Hb_011631_010 Hb_000638_280 Hb_000638_280 Hb_002897_050--Hb_000638_280 Hb_002897_050--Hb_002107_060 Hb_002897_050--Hb_000045_260 Hb_000045_260--Hb_011631_010 Hb_000045_260--Hb_000638_280 Hb_000045_260--Hb_000454_140 Hb_000045_260--Hb_000163_230 Hb_002107_060--Hb_011631_010 Hb_002107_060--Hb_000045_260 Hb_002107_060--Hb_000638_280 Hb_000375_290 Hb_000375_290 Hb_002107_060--Hb_000375_290 Hb_011631_010--Hb_000638_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.5505 107.907 53.9451 23.6496 13.837 15.114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.5973 15.0299 15.0341 16.5187 12.2747

CAGE analysis