Hb_001571_030

Information

Type -
Description -
Location Contig1571: 22783-42312
Sequence    

Annotation

kegg
ID rcu:RCOM_0265510
description hypothetical protein
nr
ID XP_012079638.1
description PREDICTED: uncharacterized protein LOC105640040 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LF37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17435 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13706: 22855-42302 , PASA_asmbl_13708: 25139-25587 , PASA_asmbl_13709: 31456-31811
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001571_030 0.0 - - PREDICTED: uncharacterized protein LOC105640040 isoform X1 [Jatropha curcas]
2 Hb_003090_150 0.1067116212 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
3 Hb_001250_040 0.1123873005 - - hypothetical protein CISIN_1g018444mg [Citrus sinensis]
4 Hb_000805_200 0.112966837 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
5 Hb_007576_070 0.123260565 - - PREDICTED: uncharacterized protein LOC105640040 isoform X3 [Jatropha curcas]
6 Hb_027380_210 0.1365535075 - - PREDICTED: uncharacterized protein LOC105634030 [Jatropha curcas]
7 Hb_000136_020 0.1391506907 - - PREDICTED: F-box/kelch-repeat protein At1g80440-like [Jatropha curcas]
8 Hb_004324_210 0.1403324848 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
9 Hb_001624_040 0.1419372188 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Jatropha curcas]
10 Hb_015026_020 0.1432036468 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
11 Hb_001894_160 0.1438041312 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005694_130 0.1450960673 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
13 Hb_001863_340 0.1458269627 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
14 Hb_011609_010 0.1485947301 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
15 Hb_161549_010 0.1492090581 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000928_250 0.1536005618 - - calcium ion binding protein, putative [Ricinus communis]
17 Hb_000997_150 0.1559457545 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_000631_090 0.1595014534 - - PREDICTED: uncharacterized protein LOC105640619 [Jatropha curcas]
19 Hb_002030_110 0.159880662 - - PREDICTED: RING-H2 finger protein ATL32-like [Jatropha curcas]
20 Hb_000671_060 0.1603880402 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001571_030 Hb_001571_030 Hb_003090_150 Hb_003090_150 Hb_001571_030--Hb_003090_150 Hb_001250_040 Hb_001250_040 Hb_001571_030--Hb_001250_040 Hb_000805_200 Hb_000805_200 Hb_001571_030--Hb_000805_200 Hb_007576_070 Hb_007576_070 Hb_001571_030--Hb_007576_070 Hb_027380_210 Hb_027380_210 Hb_001571_030--Hb_027380_210 Hb_000136_020 Hb_000136_020 Hb_001571_030--Hb_000136_020 Hb_000671_060 Hb_000671_060 Hb_003090_150--Hb_000671_060 Hb_002030_110 Hb_002030_110 Hb_003090_150--Hb_002030_110 Hb_001894_160 Hb_001894_160 Hb_003090_150--Hb_001894_160 Hb_011671_110 Hb_011671_110 Hb_003090_150--Hb_011671_110 Hb_033930_010 Hb_033930_010 Hb_003090_150--Hb_033930_010 Hb_001689_050 Hb_001689_050 Hb_001250_040--Hb_001689_050 Hb_003683_030 Hb_003683_030 Hb_001250_040--Hb_003683_030 Hb_001250_040--Hb_000136_020 Hb_007594_080 Hb_007594_080 Hb_001250_040--Hb_007594_080 Hb_001624_040 Hb_001624_040 Hb_001250_040--Hb_001624_040 Hb_005694_130 Hb_005694_130 Hb_000805_200--Hb_005694_130 Hb_000609_110 Hb_000609_110 Hb_000805_200--Hb_000609_110 Hb_000836_540 Hb_000836_540 Hb_000805_200--Hb_000836_540 Hb_000805_200--Hb_027380_210 Hb_003001_070 Hb_003001_070 Hb_000805_200--Hb_003001_070 Hb_007576_070--Hb_000805_200 Hb_000529_130 Hb_000529_130 Hb_007576_070--Hb_000529_130 Hb_003734_080 Hb_003734_080 Hb_007576_070--Hb_003734_080 Hb_000673_010 Hb_000673_010 Hb_007576_070--Hb_000673_010 Hb_001638_330 Hb_001638_330 Hb_007576_070--Hb_001638_330 Hb_161549_010 Hb_161549_010 Hb_027380_210--Hb_161549_010 Hb_027380_210--Hb_000609_110 Hb_000453_230 Hb_000453_230 Hb_027380_210--Hb_000453_230 Hb_027380_210--Hb_005694_130 Hb_027380_210--Hb_000836_540 Hb_000212_300 Hb_000212_300 Hb_027380_210--Hb_000212_300 Hb_000076_090 Hb_000076_090 Hb_000136_020--Hb_000076_090 Hb_002301_210 Hb_002301_210 Hb_000136_020--Hb_002301_210 Hb_001863_340 Hb_001863_340 Hb_000136_020--Hb_001863_340 Hb_000928_250 Hb_000928_250 Hb_000136_020--Hb_000928_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.7457 106.921 154.054 53.9358 46.5436 34.1675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.749 6.23576 20.5847 8.49437 78.7829

CAGE analysis