Hb_161549_010

Information

Type -
Description -
Location Contig161549: 4340-15362
Sequence    

Annotation

kegg
ID rcu:RCOM_0813850
description hypothetical protein
nr
ID XP_002518784.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RYK0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0813850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14472: 4147-15359 , PASA_asmbl_14473: 11768-12019 , PASA_asmbl_14474: 14837-15323
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161549_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_027380_210 0.0715974726 - - PREDICTED: uncharacterized protein LOC105634030 [Jatropha curcas]
3 Hb_000453_230 0.0967438577 - - PREDICTED: NO-associated protein 1, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_000609_110 0.1021672322 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
5 Hb_005941_020 0.1100346362 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
6 Hb_000805_200 0.1150743278 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
7 Hb_000836_540 0.1184492548 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
8 Hb_001488_210 0.1271201527 - - PREDICTED: protein RIK [Jatropha curcas]
9 Hb_005694_130 0.1275258151 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
10 Hb_001624_040 0.130020508 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Jatropha curcas]
11 Hb_054865_020 0.1311077769 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
12 Hb_011616_040 0.1336263787 - - glucan water dikinase 3, partial [Manihot esculenta]
13 Hb_000477_070 0.135075776 - - histone h2a, putative [Ricinus communis]
14 Hb_001894_160 0.1351691965 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012305_140 0.1354748317 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
16 Hb_011671_110 0.1375621455 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
17 Hb_002609_190 0.1395726618 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
18 Hb_033930_010 0.1399152099 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
19 Hb_002686_410 0.1403996758 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
20 Hb_002447_050 0.1407131578 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_161549_010 Hb_161549_010 Hb_027380_210 Hb_027380_210 Hb_161549_010--Hb_027380_210 Hb_000453_230 Hb_000453_230 Hb_161549_010--Hb_000453_230 Hb_000609_110 Hb_000609_110 Hb_161549_010--Hb_000609_110 Hb_005941_020 Hb_005941_020 Hb_161549_010--Hb_005941_020 Hb_000805_200 Hb_000805_200 Hb_161549_010--Hb_000805_200 Hb_000836_540 Hb_000836_540 Hb_161549_010--Hb_000836_540 Hb_027380_210--Hb_000609_110 Hb_027380_210--Hb_000453_230 Hb_005694_130 Hb_005694_130 Hb_027380_210--Hb_005694_130 Hb_027380_210--Hb_000836_540 Hb_000212_300 Hb_000212_300 Hb_027380_210--Hb_000212_300 Hb_004837_020 Hb_004837_020 Hb_000453_230--Hb_004837_020 Hb_002447_050 Hb_002447_050 Hb_000453_230--Hb_002447_050 Hb_000665_150 Hb_000665_150 Hb_000453_230--Hb_000665_150 Hb_000453_230--Hb_000836_540 Hb_000609_110--Hb_005694_130 Hb_000609_110--Hb_000836_540 Hb_003001_070 Hb_003001_070 Hb_000609_110--Hb_003001_070 Hb_003992_180 Hb_003992_180 Hb_000609_110--Hb_003992_180 Hb_000609_110--Hb_000805_200 Hb_001894_160 Hb_001894_160 Hb_005941_020--Hb_001894_160 Hb_033930_010 Hb_033930_010 Hb_005941_020--Hb_033930_010 Hb_011671_110 Hb_011671_110 Hb_005941_020--Hb_011671_110 Hb_015026_020 Hb_015026_020 Hb_005941_020--Hb_015026_020 Hb_000317_190 Hb_000317_190 Hb_005941_020--Hb_000317_190 Hb_000086_640 Hb_000086_640 Hb_005941_020--Hb_000086_640 Hb_000805_200--Hb_005694_130 Hb_000805_200--Hb_000836_540 Hb_000805_200--Hb_027380_210 Hb_000805_200--Hb_003001_070 Hb_001571_030 Hb_001571_030 Hb_000805_200--Hb_001571_030 Hb_000836_540--Hb_005694_130 Hb_001369_030 Hb_001369_030 Hb_000836_540--Hb_001369_030 Hb_003925_060 Hb_003925_060 Hb_000836_540--Hb_003925_060 Hb_002056_100 Hb_002056_100 Hb_000836_540--Hb_002056_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.956 29.8347 35.2528 11.3753 7.33258 7.74067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.82615 1.4032 2.07691 8.67334 22.9083

CAGE analysis