Hb_000086_640

Information

Type -
Description -
Location Contig86: 563273-565354
Sequence    

Annotation

kegg
ID rcu:RCOM_0821520
description Phytosulfokine receptor precursor, putative (EC:3.1.3.16 1.3.1.74)
nr
ID XP_002525820.1
description Phytosulfokine receptor precursor, putative [Ricinus communis]
swissprot
ID Q9FN37
description Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1
trembl
ID B9SIK1
description Phytosulfokine receptor, putative OS=Ricinus communis GN=RCOM_0821520 PE=4 SV=1
Gene Ontology
ID GO:0016491
description phytosulfokine receptor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60782: 564156-564886 , PASA_asmbl_60783: 564968-565393
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_640 0.0 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
2 Hb_000035_490 0.0887816394 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
3 Hb_132840_020 0.0908853842 - - PREDICTED: protein LHY [Jatropha curcas]
4 Hb_015807_080 0.0991471387 - - PREDICTED: helicase protein MOM1-like [Jatropha curcas]
5 Hb_033930_010 0.1024243373 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
6 Hb_005941_020 0.1058399133 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
7 Hb_000753_140 0.1070502282 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
8 Hb_001386_020 0.1072680256 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011671_110 0.109059241 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
10 Hb_001894_160 0.1097650532 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007224_010 0.1126321497 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
12 Hb_161901_020 0.1145182919 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
13 Hb_000318_410 0.1160385125 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
14 Hb_011381_070 0.124908972 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
15 Hb_054865_050 0.1255662833 - - calcium-dependent protein kinase, putative [Ricinus communis]
16 Hb_002249_170 0.129643366 - - copine, putative [Ricinus communis]
17 Hb_000622_210 0.1311521671 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X3 [Jatropha curcas]
18 Hb_001514_240 0.1358921092 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
19 Hb_187005_010 0.1367724836 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
20 Hb_001499_070 0.1371871766 - - PREDICTED: calcium-transporting ATPase 9, plasma membrane-type isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_640 Hb_000086_640 Hb_000035_490 Hb_000035_490 Hb_000086_640--Hb_000035_490 Hb_132840_020 Hb_132840_020 Hb_000086_640--Hb_132840_020 Hb_015807_080 Hb_015807_080 Hb_000086_640--Hb_015807_080 Hb_033930_010 Hb_033930_010 Hb_000086_640--Hb_033930_010 Hb_005941_020 Hb_005941_020 Hb_000086_640--Hb_005941_020 Hb_000753_140 Hb_000753_140 Hb_000086_640--Hb_000753_140 Hb_011381_070 Hb_011381_070 Hb_000035_490--Hb_011381_070 Hb_001021_100 Hb_001021_100 Hb_000035_490--Hb_001021_100 Hb_000035_490--Hb_132840_020 Hb_001863_340 Hb_001863_340 Hb_000035_490--Hb_001863_340 Hb_011671_110 Hb_011671_110 Hb_000035_490--Hb_011671_110 Hb_001294_050 Hb_001294_050 Hb_132840_020--Hb_001294_050 Hb_048476_040 Hb_048476_040 Hb_132840_020--Hb_048476_040 Hb_132840_020--Hb_011381_070 Hb_001627_010 Hb_001627_010 Hb_132840_020--Hb_001627_010 Hb_000329_790 Hb_000329_790 Hb_132840_020--Hb_000329_790 Hb_008120_040 Hb_008120_040 Hb_015807_080--Hb_008120_040 Hb_004117_270 Hb_004117_270 Hb_015807_080--Hb_004117_270 Hb_104920_010 Hb_104920_010 Hb_015807_080--Hb_104920_010 Hb_015807_080--Hb_000753_140 Hb_015807_080--Hb_005941_020 Hb_033930_010--Hb_005941_020 Hb_001894_160 Hb_001894_160 Hb_033930_010--Hb_001894_160 Hb_033930_010--Hb_011671_110 Hb_000318_410 Hb_000318_410 Hb_033930_010--Hb_000318_410 Hb_000622_210 Hb_000622_210 Hb_033930_010--Hb_000622_210 Hb_005941_020--Hb_001894_160 Hb_005941_020--Hb_011671_110 Hb_015026_020 Hb_015026_020 Hb_005941_020--Hb_015026_020 Hb_000317_190 Hb_000317_190 Hb_005941_020--Hb_000317_190 Hb_000753_140--Hb_000318_410 Hb_002804_010 Hb_002804_010 Hb_000753_140--Hb_002804_010 Hb_001386_020 Hb_001386_020 Hb_000753_140--Hb_001386_020 Hb_000753_140--Hb_132840_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.08343 6.02734 6.92921 2.60472 0.689572 0.341125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.518077 0.611467 0.48365 1.54688 3.80936

CAGE analysis