Hb_132840_020

Information

Type -
Description -
Location Contig132840: 13340-16741
Sequence    

Annotation

kegg
ID rcu:RCOM_1340450
description hypothetical protein
nr
ID XP_012083087.1
description PREDICTED: protein LHY [Jatropha curcas]
swissprot
ID Q6R0H1
description Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2
trembl
ID A0A067JWZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14173 PE=4 SV=1
Gene Ontology
ID GO:0003682
description protein lhy-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09331: 13387-26581 , PASA_asmbl_09333: 13387-26581 , PASA_asmbl_09334: 13387-26581 , PASA_asmbl_09335: 13387-26581 , PASA_asmbl_09336: 13387-26581 , PASA_asmbl_09337: 13387-26581 , PASA_asmbl_09338: 13387-26581 , PASA_asmbl_09339: 13387-26581 , PASA_asmbl_09340: 13387-26581 , PASA_asmbl_09341: 13387-26581 , PASA_asmbl_09342: 13387-26581 , PASA_asmbl_09343: 13387-26581 , PASA_asmbl_09346: 14375-14560
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132840_020 0.0 - - PREDICTED: protein LHY [Jatropha curcas]
2 Hb_001294_050 0.0896403222 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
3 Hb_000086_640 0.0908853842 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
4 Hb_048476_040 0.0983687779 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
5 Hb_011381_070 0.0986367846 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
6 Hb_001627_010 0.1009724938 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
7 Hb_000329_790 0.1031688114 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
8 Hb_007224_010 0.10789956 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
9 Hb_005080_020 0.1083677772 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
10 Hb_000035_490 0.108627819 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
11 Hb_009449_100 0.1124891228 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
12 Hb_054865_050 0.1133568539 - - calcium-dependent protein kinase, putative [Ricinus communis]
13 Hb_000318_410 0.1144966465 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
14 Hb_001386_020 0.1151822511 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000753_140 0.1157706113 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
16 Hb_001102_090 0.1157721605 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
17 Hb_000366_050 0.1173335123 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
18 Hb_005064_070 0.1180903954 - - PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
19 Hb_000336_180 0.118763482 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003430_070 0.119905191 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]

Gene co-expression network

sample Hb_132840_020 Hb_132840_020 Hb_001294_050 Hb_001294_050 Hb_132840_020--Hb_001294_050 Hb_000086_640 Hb_000086_640 Hb_132840_020--Hb_000086_640 Hb_048476_040 Hb_048476_040 Hb_132840_020--Hb_048476_040 Hb_011381_070 Hb_011381_070 Hb_132840_020--Hb_011381_070 Hb_001627_010 Hb_001627_010 Hb_132840_020--Hb_001627_010 Hb_000329_790 Hb_000329_790 Hb_132840_020--Hb_000329_790 Hb_001102_090 Hb_001102_090 Hb_001294_050--Hb_001102_090 Hb_000336_180 Hb_000336_180 Hb_001294_050--Hb_000336_180 Hb_001294_050--Hb_001627_010 Hb_001294_050--Hb_048476_040 Hb_005725_280 Hb_005725_280 Hb_001294_050--Hb_005725_280 Hb_000035_490 Hb_000035_490 Hb_000086_640--Hb_000035_490 Hb_015807_080 Hb_015807_080 Hb_000086_640--Hb_015807_080 Hb_033930_010 Hb_033930_010 Hb_000086_640--Hb_033930_010 Hb_005941_020 Hb_005941_020 Hb_000086_640--Hb_005941_020 Hb_000753_140 Hb_000753_140 Hb_000086_640--Hb_000753_140 Hb_005064_070 Hb_005064_070 Hb_048476_040--Hb_005064_070 Hb_048476_040--Hb_000329_790 Hb_005080_020 Hb_005080_020 Hb_048476_040--Hb_005080_020 Hb_054865_050 Hb_054865_050 Hb_048476_040--Hb_054865_050 Hb_000366_050 Hb_000366_050 Hb_011381_070--Hb_000366_050 Hb_001158_120 Hb_001158_120 Hb_011381_070--Hb_001158_120 Hb_011381_070--Hb_000035_490 Hb_002609_290 Hb_002609_290 Hb_011381_070--Hb_002609_290 Hb_001294_040 Hb_001294_040 Hb_011381_070--Hb_001294_040 Hb_002014_050 Hb_002014_050 Hb_001627_010--Hb_002014_050 Hb_007224_010 Hb_007224_010 Hb_001627_010--Hb_007224_010 Hb_001519_060 Hb_001519_060 Hb_001627_010--Hb_001519_060 Hb_000111_390 Hb_000111_390 Hb_001627_010--Hb_000111_390 Hb_000329_790--Hb_005064_070 Hb_009449_100 Hb_009449_100 Hb_000329_790--Hb_009449_100 Hb_001179_010 Hb_001179_010 Hb_000329_790--Hb_001179_010 Hb_000329_790--Hb_000366_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.675 588.222 578.22 302.411 28.4106 31.4594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.4421 46.1769 32.5464 148.718 285.745

CAGE analysis