Hb_005725_280

Information

Type -
Description -
Location Contig5725: 178899-181973
Sequence    

Annotation

kegg
ID pop:POPTR_0002s11500g
description POPTRDRAFT_412817; hypothetical protein
nr
ID XP_012068156.1
description PREDICTED: sodium-coupled neutral amino acid transporter 5-like [Jatropha curcas]
swissprot
ID Q9JM15
description Sodium-coupled neutral amino acid transporter 1 OS=Rattus norvegicus GN=Slc38a1 PE=1 SV=1
trembl
ID A0A067LAP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15982 PE=4 SV=1
Gene Ontology
ID GO:0016021
description sodium-coupled neutral amino acid transporter 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49433: 179057-181973
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005725_280 0.0 - - PREDICTED: sodium-coupled neutral amino acid transporter 5-like [Jatropha curcas]
2 Hb_000336_180 0.0908864563 - - conserved hypothetical protein [Ricinus communis]
3 Hb_094437_050 0.1011649739 - - PREDICTED: uncharacterized protein LOC105630877 isoform X2 [Jatropha curcas]
4 Hb_000892_030 0.1065887438 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
5 Hb_002498_250 0.1110263956 - - 5'-adenylylsulfate reductase 1, chloroplast precursor, putative [Ricinus communis]
6 Hb_004218_080 0.1137800621 - - PREDICTED: uncharacterized protein LOC105631207 [Jatropha curcas]
7 Hb_007193_030 0.1140686126 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
8 Hb_089305_010 0.118227839 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
9 Hb_001294_050 0.1193085104 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
10 Hb_001102_200 0.1252007566 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
11 Hb_000365_340 0.1294313296 - - PREDICTED: uncharacterized protein LOC105649067 [Jatropha curcas]
12 Hb_021409_110 0.131105171 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_001621_050 0.1327914791 - - PREDICTED: uncharacterized protein LOC105647273 [Jatropha curcas]
14 Hb_005408_080 0.133758205 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
15 Hb_000110_260 0.1386283526 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
16 Hb_000320_270 0.1390429416 - - PREDICTED: 5'-adenylylsulfate reductase 1, chloroplastic [Jatropha curcas]
17 Hb_002014_050 0.1407257562 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]
18 Hb_132840_020 0.1457696665 - - PREDICTED: protein LHY [Jatropha curcas]
19 Hb_001396_120 0.1459015722 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 16 [Jatropha curcas]
20 Hb_010812_060 0.1463422075 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]

Gene co-expression network

sample Hb_005725_280 Hb_005725_280 Hb_000336_180 Hb_000336_180 Hb_005725_280--Hb_000336_180 Hb_094437_050 Hb_094437_050 Hb_005725_280--Hb_094437_050 Hb_000892_030 Hb_000892_030 Hb_005725_280--Hb_000892_030 Hb_002498_250 Hb_002498_250 Hb_005725_280--Hb_002498_250 Hb_004218_080 Hb_004218_080 Hb_005725_280--Hb_004218_080 Hb_007193_030 Hb_007193_030 Hb_005725_280--Hb_007193_030 Hb_001294_050 Hb_001294_050 Hb_000336_180--Hb_001294_050 Hb_001102_090 Hb_001102_090 Hb_000336_180--Hb_001102_090 Hb_132840_020 Hb_132840_020 Hb_000336_180--Hb_132840_020 Hb_001396_120 Hb_001396_120 Hb_000336_180--Hb_001396_120 Hb_007224_010 Hb_007224_010 Hb_000336_180--Hb_007224_010 Hb_094437_050--Hb_002498_250 Hb_001019_020 Hb_001019_020 Hb_094437_050--Hb_001019_020 Hb_094437_050--Hb_000892_030 Hb_002400_040 Hb_002400_040 Hb_094437_050--Hb_002400_040 Hb_000047_010 Hb_000047_010 Hb_094437_050--Hb_000047_010 Hb_000892_030--Hb_000047_010 Hb_005694_150 Hb_005694_150 Hb_000892_030--Hb_005694_150 Hb_000365_340 Hb_000365_340 Hb_000892_030--Hb_000365_340 Hb_000892_030--Hb_002400_040 Hb_000373_250 Hb_000373_250 Hb_002498_250--Hb_000373_250 Hb_002498_250--Hb_004218_080 Hb_011930_120 Hb_011930_120 Hb_002498_250--Hb_011930_120 Hb_007120_010 Hb_007120_010 Hb_002498_250--Hb_007120_010 Hb_004218_080--Hb_007193_030 Hb_000156_080 Hb_000156_080 Hb_004218_080--Hb_000156_080 Hb_004218_080--Hb_000365_340 Hb_003106_240 Hb_003106_240 Hb_004218_080--Hb_003106_240 Hb_001369_020 Hb_001369_020 Hb_007193_030--Hb_001369_020 Hb_001623_410 Hb_001623_410 Hb_007193_030--Hb_001623_410 Hb_073171_050 Hb_073171_050 Hb_007193_030--Hb_073171_050 Hb_003905_040 Hb_003905_040 Hb_007193_030--Hb_003905_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.673664 14.8507 11.4722 10.6905 0.858014 0.644686
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.807568 0.614889 0.3485 0.955323 6.77289

CAGE analysis